BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034662
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    80   1e-13
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    79   3e-13
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    79   3e-13
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam...    72   6e-11
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                     71   1e-10

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
 Frame = +1

Query: 1   AYYHVDEGKLDAKAKKAIFLGYATGVKGYRLWSIDDSKFIISRDVTFDEDTMVASSKAKV 180
           AYYHV E KLD +AKKA+F+G++ GVKGYRLW ++  K IISRDVTFDE  M+     + 
Sbjct: 645 AYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEAKKTIISRDVTFDESAMLKKVNPEG 704

Query: 181 IDD--GDIETSKSQVVEIESK 237
            D     +E ++ Q VE E K
Sbjct: 705 ADSTPQQVECARKQ-VEFEPK 724


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 44/76 (57%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
 Frame = +1

Query: 1   AYYHVDEGKLDAKAKKAIFLGYATGVKGYRLWSIDD--SKFIISRDVTFDEDTMVASSKA 174
           AY HV +GKL+ +A K IFLGYATGVKGYRLW  +D   KFIISRDVTFDE  M    K 
Sbjct: 765 AYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRK- 823

Query: 175 KVIDDGDIE-TSKSQV 219
              + GD+  TSK+ +
Sbjct: 824 ---EFGDLAGTSKTDL 836


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 44/76 (57%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
 Frame = +1

Query: 1    AYYHVDEGKLDAKAKKAIFLGYATGVKGYRLWSIDD--SKFIISRDVTFDEDTMVASSKA 174
            AY HV +GKL+ +A K IFLGYATGVKGYRLW  +D   KFIISRDVTFDE  M    K 
Sbjct: 978  AYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRK- 1036

Query: 175  KVIDDGDIE-TSKSQV 219
               + GD+  TSK+ +
Sbjct: 1037 ---EFGDLAGTSKTDL 1049


>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
           score: 12.35) [Arabidopsis thaliana]
           gi|7267184|emb|CAB77896.1| putative transposon protein
           [Arabidopsis thaliana]
          Length = 1104

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = +1

Query: 1   AYYHVDEGKLDAKAKKAIFLGYATGVKGYRLWSIDDSKFIISRDVTFDEDTMVASSKAKV 180
           AY H ++GKL  +  K +FLGY  G KGY++W ID+ K +ISR+V F+ED++    ++  
Sbjct: 550 AYVHQEQGKLKPRVLKGVFLGYPQGTKGYKVWLIDEEKCVISRNVVFNEDSVFKDLQSGS 609

Query: 181 IDDGDIETSKSQV-VEIESKGYIDS-NRVQ 264
            D+ +  T +SQ+ +E   K  +++ N+VQ
Sbjct: 610 KDEDETVTQESQIEIETPPKSELETQNQVQ 639


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
 Frame = +1

Query: 1   AYYHVDEGKLDAKAKKAIFLGYATGVKGYRLWSIDDSKFIISRDVTFDEDTMVASS--KA 174
           AY H+D+GKL  +A K IF+GY  G KGY++W +++ K +ISR+V F E+++   +  K 
Sbjct: 681 AYVHIDQGKLKPRALKGIFIGYPAGTKGYKIWLLEEHKCVISRNVLFHEESVYKDTMKKE 740

Query: 175 KVIDD--GDIETSKSQVVEIESKGYIDSNRV 261
           +V++        SKS ++++++ G ++S  V
Sbjct: 741 RVVESEAEPASHSKSTLIKVKTPGNLNSGEV 771