BLASTX nr result

ID: Bupleurum21_contig00034581 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034581
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320032.1| predicted protein [Populus trichocarpa] gi|2...   169   2e-40
ref|XP_002510099.1| E3 ubiquitin ligase PUB14, putative [Ricinus...   168   5e-40
gb|AFK46109.1| unknown [Medicago truncatula]                          166   1e-39
ref|XP_003589079.1| U-box domain-containing protein [Medicago tr...   166   1e-39
ref|XP_004142891.1| PREDICTED: U-box domain-containing protein 4...   166   2e-39

>ref|XP_002320032.1| predicted protein [Populus trichocarpa] gi|222860805|gb|EEE98347.1|
           predicted protein [Populus trichocarpa]
          Length = 272

 Score =  169 bits (429), Expect = 2e-40
 Identities = 88/130 (67%), Positives = 101/130 (77%), Gaps = 13/130 (10%)
 Frame = -1

Query: 351 QEYGVTAILNLSLCDNN-------------IKALRNGNQTTKENAACALLRLSEVEDNRA 211
           QEYGVTAILNLSLCD N             ++ALR G  T KENAACALLRLS++E+N+ 
Sbjct: 38  QEYGVTAILNLSLCDENKELIASSGAIKPLVRALRTGTPTAKENAACALLRLSQMEENKV 97

Query: 210 VIGRSGSIPPLVNLLESGSIRGKKDAATVLYSLCSVKENKIRAIEGGIAKVLVELMADFG 31
            IGRSG+IP LVNLLE+G+ RGKKDAAT LYSLCS KENKIRA++ GI K LVELMADFG
Sbjct: 98  AIGRSGAIPLLVNLLETGAFRGKKDAATALYSLCSAKENKIRAVQAGIMKPLVELMADFG 157

Query: 30  SSMVDKCEFM 1
           S+MVDK  F+
Sbjct: 158 SNMVDKSAFV 167


>ref|XP_002510099.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis]
           gi|223550800|gb|EEF52286.1| E3 ubiquitin ligase PUB14,
           putative [Ricinus communis]
          Length = 352

 Score =  168 bits (425), Expect = 5e-40
 Identities = 88/130 (67%), Positives = 100/130 (76%), Gaps = 13/130 (10%)
 Frame = -1

Query: 351 QEYGVTAILNLSLCDNN-------------IKALRNGNQTTKENAACALLRLSEVEDNRA 211
           QEYGVTAILNLSLCD N             ++AL+ G  T KENAACALLRLS+VE+N+ 
Sbjct: 119 QEYGVTAILNLSLCDENKEVIASSGAIKPLVRALKTGTSTAKENAACALLRLSQVEENKV 178

Query: 210 VIGRSGSIPPLVNLLESGSIRGKKDAATVLYSLCSVKENKIRAIEGGIAKVLVELMADFG 31
            IGRSGSIP LVNLLE+G  RGKKDAAT LYSLCSVKENK+RA++ GI K LVELMADF 
Sbjct: 179 AIGRSGSIPLLVNLLETGGFRGKKDAATALYSLCSVKENKMRAVQAGIMKPLVELMADFE 238

Query: 30  SSMVDKCEFM 1
           S+MVDK  F+
Sbjct: 239 SNMVDKSAFV 248


>gb|AFK46109.1| unknown [Medicago truncatula]
          Length = 344

 Score =  166 bits (421), Expect = 1e-39
 Identities = 87/130 (66%), Positives = 102/130 (78%), Gaps = 13/130 (10%)
 Frame = -1

Query: 351 QEYGVTAILNLSLCDNN-------------IKALRNGNQTTKENAACALLRLSEVEDNRA 211
           QEYGVTAILNLSLCD N             ++AL +G  T KENAACALLRLS+VE+N+A
Sbjct: 118 QEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKA 177

Query: 210 VIGRSGSIPPLVNLLESGSIRGKKDAATVLYSLCSVKENKIRAIEGGIAKVLVELMADFG 31
            IGRSG+IP LVNLL SG IRGKKDA+T LY+LCSVKENK+RA++ GI KVLVELMADF 
Sbjct: 178 AIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCSVKENKMRAVKAGIMKVLVELMADFE 237

Query: 30  SSMVDKCEFM 1
           S+MVDK  ++
Sbjct: 238 SNMVDKSAYV 247


>ref|XP_003589079.1| U-box domain-containing protein [Medicago truncatula]
           gi|355478127|gb|AES59330.1| U-box domain-containing
           protein [Medicago truncatula]
          Length = 336

 Score =  166 bits (421), Expect = 1e-39
 Identities = 87/130 (66%), Positives = 102/130 (78%), Gaps = 13/130 (10%)
 Frame = -1

Query: 351 QEYGVTAILNLSLCDNN-------------IKALRNGNQTTKENAACALLRLSEVEDNRA 211
           QEYGVTAILNLSLCD N             ++AL +G  T KENAACALLRLS+VE+N+A
Sbjct: 110 QEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKA 169

Query: 210 VIGRSGSIPPLVNLLESGSIRGKKDAATVLYSLCSVKENKIRAIEGGIAKVLVELMADFG 31
            IGRSG+IP LVNLL SG IRGKKDA+T LY+LCSVKENK+RA++ GI KVLVELMADF 
Sbjct: 170 AIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCSVKENKMRAVKAGIMKVLVELMADFE 229

Query: 30  SSMVDKCEFM 1
           S+MVDK  ++
Sbjct: 230 SNMVDKSAYV 239


>ref|XP_004142891.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus]
           gi|449482708|ref|XP_004156379.1| PREDICTED: U-box
           domain-containing protein 4-like [Cucumis sativus]
          Length = 352

 Score =  166 bits (419), Expect = 2e-39
 Identities = 86/130 (66%), Positives = 101/130 (77%), Gaps = 13/130 (10%)
 Frame = -1

Query: 351 QEYGVTAILNLSLCDNN-------------IKALRNGNQTTKENAACALLRLSEVEDNRA 211
           QEYGVTAILNLSLCD N             ++AL +G  T KENAACALLRLS++E+N+ 
Sbjct: 119 QEYGVTAILNLSLCDENKELIAASGAIKPLVRALMSGTPTAKENAACALLRLSQMEENKI 178

Query: 210 VIGRSGSIPPLVNLLESGSIRGKKDAATVLYSLCSVKENKIRAIEGGIAKVLVELMADFG 31
            IGRSG+IP LVNLLE+G  RGKKDA+T LYSLCSVKENKIRA++ GI + LVELMADFG
Sbjct: 179 AIGRSGAIPLLVNLLENGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFG 238

Query: 30  SSMVDKCEFM 1
           S+MVDK  F+
Sbjct: 239 SNMVDKSAFV 248


Top