BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034523
         (573 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22748.3| unnamed protein product [Vitis vinifera]              246   1e-63
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi...   246   1e-63
ref|NP_191564.1| pentatricopeptide repeat-containing protein [Ar...   237   1e-60
ref|XP_002878314.1| pentatricopeptide repeat-containing protein ...   236   3e-60
ref|XP_002894516.1| pentatricopeptide repeat-containing protein ...   234   8e-60

>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  246 bits (629), Expect = 1e-63
 Identities = 119/151 (78%), Positives = 130/151 (86%)
 Frame = -3

Query: 571 VLHFTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFT 392
           VLHFTTLIDGLSRAGNLDACKYFFDEM K GC PDVVCYTV+ITG+IVAGEL+ AQ  F 
Sbjct: 368 VLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFE 427

Query: 391 QMLVKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAG 212
           +M VKGQ PNVFTYNSMIRGLCM  KF+EA SML +MESRGCNPNFLVYNTLV  LRNAG
Sbjct: 428 EMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAG 487

Query: 211 KISEADEVIKVMVEKGRYTHLIPKFKRYRRC 119
           K+ EA EVI+ MV+KG+Y HL+ KFK YRRC
Sbjct: 488 KLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC 518


>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  246 bits (629), Expect = 1e-63
 Identities = 119/151 (78%), Positives = 130/151 (86%)
 Frame = -3

Query: 571 VLHFTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFT 392
           VLHFTTLIDGLSRAGNLDACKYFFDEM K GC PDVVCYTV+ITG+IVAGEL+ AQ  F 
Sbjct: 364 VLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFE 423

Query: 391 QMLVKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAG 212
           +M VKGQ PNVFTYNSMIRGLCM  KF+EA SML +MESRGCNPNFLVYNTLV  LRNAG
Sbjct: 424 EMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAG 483

Query: 211 KISEADEVIKVMVEKGRYTHLIPKFKRYRRC 119
           K+ EA EVI+ MV+KG+Y HL+ KFK YRRC
Sbjct: 484 KLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC 514


>ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g60050 gi|7076758|emb|CAB75920.1| putative protein
           [Arabidopsis thaliana] gi|332646485|gb|AEE80006.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 473

 Score =  237 bits (604), Expect = 1e-60
 Identities = 110/150 (73%), Positives = 129/150 (86%)
 Frame = -3

Query: 571 VLHFTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFT 392
           VLH+TTLIDGLSRAGNL+ACKYF DEM K GC PDVVCYTV+ITG++V+GEL  A+E F 
Sbjct: 324 VLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFR 383

Query: 391 QMLVKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAG 212
           +M VKGQ PNVFTYNSMIRGLCM G+F EAC +L +MESRGCNPNF+VY+TLVSYLR AG
Sbjct: 384 EMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAG 443

Query: 211 KISEADEVIKVMVEKGRYTHLIPKFKRYRR 122
           K+SEA +VI+ MV+KG Y HL+PK  +YRR
Sbjct: 444 KLSEARKVIREMVKKGHYVHLVPKMMKYRR 473



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/137 (27%), Positives = 64/137 (46%)
 Frame = -3

Query: 571 VLHFTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFT 392
           VL +  L+    R G +D     FDEMA+ G SPD   Y +++       +   A     
Sbjct: 254 VLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLN 313

Query: 391 QMLVKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAG 212
            M   G  P+V  Y ++I GL   G  +     L++M   GC P+ + Y  +++    +G
Sbjct: 314 HMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSG 373

Query: 211 KISEADEVIKVMVEKGR 161
           ++ +A E+ + M  KG+
Sbjct: 374 ELDKAKEMFREMTVKGQ 390



 Score = 58.5 bits (140), Expect = 7e-07
 Identities = 34/133 (25%), Positives = 63/133 (47%)
 Frame = -3

Query: 562 FTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFTQML 383
           +  +++ L         ++ + +M + G SPDV+ Y +++      G++      F +M 
Sbjct: 222 YNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMA 281

Query: 382 VKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAGKIS 203
             G +P+ +TYN ++  L    K   A + LN M+  G +P+ L Y TL+  L  AG + 
Sbjct: 282 RDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLE 341

Query: 202 EADEVIKVMVEKG 164
                +  MV+ G
Sbjct: 342 ACKYFLDEMVKAG 354


>ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324152|gb|EFH54573.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 475

 Score =  236 bits (601), Expect = 3e-60
 Identities = 109/150 (72%), Positives = 130/150 (86%)
 Frame = -3

Query: 571 VLHFTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFT 392
           VLH+TTLIDGLSRAGNL+ACKYF DEM K GC PDVVCYTV+ITG++V+GEL+ A+E F 
Sbjct: 326 VLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFK 385

Query: 391 QMLVKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAG 212
           +M V+GQ PNVFTYNSMIRGLCM G+F EAC +L +MESRGCNPNF+VY+TLVSYLR AG
Sbjct: 386 EMTVEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAG 445

Query: 211 KISEADEVIKVMVEKGRYTHLIPKFKRYRR 122
           K+SEA +VI+ MV+KG Y HL+PK  +YRR
Sbjct: 446 KLSEARKVIRDMVKKGHYVHLVPKMMKYRR 475



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/133 (24%), Positives = 63/133 (47%)
 Frame = -3

Query: 562 FTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFTQML 383
           +  +++ L         ++ +++M + G SPDV+ Y +++      G++      F +M 
Sbjct: 224 YNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMA 283

Query: 382 VKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAGKIS 203
             G +P+ +TYN ++  L    K   A + LN M+  G + + L Y TL+  L  AG + 
Sbjct: 284 RDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGLSRAGNLE 343

Query: 202 EADEVIKVMVEKG 164
                +  MV+ G
Sbjct: 344 ACKYFLDEMVKAG 356


>ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297340358|gb|EFH70775.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 477

 Score =  234 bits (597), Expect = 8e-60
 Identities = 108/150 (72%), Positives = 126/150 (84%)
 Frame = -3

Query: 571 VLHFTTLIDGLSRAGNLDACKYFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFT 392
           V+HFTTL+DGLSRAG L+ACKYF DEM K GC+PDVVCYTV+ITG+I  GEL+ A+E F 
Sbjct: 327 VIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFK 386

Query: 391 QMLVKGQAPNVFTYNSMIRGLCMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAG 212
           +M  KGQ PNVFTYNSMIRG CM GKF EACS+L +MESRGCNPNF+VY+TLV+ LRNAG
Sbjct: 387 EMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNAG 446

Query: 211 KISEADEVIKVMVEKGRYTHLIPKFKRYRR 122
           K+ EA E++K MVEKG Y HLI  FK+YRR
Sbjct: 447 KVLEAHEIVKDMVEKGHYVHLISMFKKYRR 476



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
 Frame = -3

Query: 508 YFFDEMAKYGCSPDVVCYTVIITGFIVAGELQTAQEYFTQMLVKGQAPNVFTYNSMIRGL 329
           + +++M + G SPDV+ Y +++      G+         +M+  G +P+++TYN ++  L
Sbjct: 243 WVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHL 302

Query: 328 CMFGKFDEACSMLNDMESRGCNPNFLVYNTLVSYLRNAGKISEA----DEVIKV 179
               K   A ++L  M   G  P  + + TLV  L  AGK+       DE++KV
Sbjct: 303 ATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKV 356