BLASTX nr result
ID: Bupleurum21_contig00034504
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00034504
(403 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat... 226 1e-57
ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat... 223 1e-56
ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|2... 222 3e-56
ref|XP_002514567.1| pentatricopeptide repeat-containing protein,... 217 7e-55
ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [S... 215 3e-54
>ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative
pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 226 bits (576), Expect = 1e-57
Identities = 103/134 (76%), Positives = 123/134 (91%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
GKQIHAYIIRT+Y DN+FV SAL D+YCKCR+++YAE VFR+M++KN++SWTAM+VGYGQ
Sbjct: 289 GKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQ 348
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITV 44
NGYSEEAVRI+C+MQR I PD +TLGS+ISSCANLAS+EEGAQFHGQAL SGLI +TV
Sbjct: 349 NGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTV 408
Query: 43 SNALVTLYGKCGSI 2
SNAL+TLYGKCGS+
Sbjct: 409 SNALITLYGKCGSL 422
Score = 86.7 bits (213), Expect = 2e-15
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 31/165 (18%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCK------------------------------- 317
G+QIH I + Y +FV S L D+Y K
Sbjct: 157 GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR 216
Query: 316 CRSIRYAETVFRRMKNKNIVSWTAMVVGYGQNGYSEEAVRIYCEMQRMGIVPDGYTLGSL 137
CR I AE +F M K+ +SWT ++ G QNG +EAV + EM G D +T GS+
Sbjct: 217 CRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSV 276
Query: 136 ISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKCGSI 2
+++C +++EG Q H + + +I V +AL+ +Y KC ++
Sbjct: 277 LTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNV 321
Score = 79.3 bits (194), Expect = 3e-13
Identities = 39/105 (37%), Positives = 60/105 (57%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
G Q H + + + V V +AL LY KC S+ +A +F MK ++ VSWTA+V GY Q
Sbjct: 390 GAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQ 449
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQF 89
G + E + ++ M GIVPDG T ++S+C+ +E+G +
Sbjct: 450 FGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHY 494
Score = 68.2 bits (165), Expect = 7e-10
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Frame = -1
Query: 358 NVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQNGYSEEAVRIYCEMQ 179
N+F + L Y K ++ + VF M N ++VSW +++ GY NG E+VR+Y M
Sbjct: 70 NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129
Query: 178 RMGIVP-DGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKCGSI 2
+ G V + T +++ +N ++ G Q HGQ G S++ V + LV +Y K G I
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189
>ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 223 bits (569), Expect = 1e-56
Identities = 106/134 (79%), Positives = 122/134 (91%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
GKQ+HAYIIRT+Y DN+FV SAL D+YCKC+SI+ AETVFR+M KN+VSWTAM+VGYGQ
Sbjct: 293 GKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQ 352
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITV 44
NGYSEEAV+I+C+MQ GI PD +TLGS+ISSCANLAS+EEGAQFH +ALVSGLIS ITV
Sbjct: 353 NGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITV 412
Query: 43 SNALVTLYGKCGSI 2
SNALVTLYGKCGSI
Sbjct: 413 SNALVTLYGKCGSI 426
Score = 92.0 bits (227), Expect = 4e-17
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCK------------------------------- 317
G Q+H ++++ + VFV S L D+Y K
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMR 220
Query: 316 CRSIRYAETVFRRMKNKNIVSWTAMVVGYGQNGYSEEAVRIYCEMQRMGIVPDGYTLGSL 137
C I + +F M+ K+ +SWTAM+ G+ QNG EA+ ++ EM+ + D YT GS+
Sbjct: 221 CSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSV 280
Query: 136 ISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKCGSI 2
+++C + +++EG Q H + + +I V +ALV +Y KC SI
Sbjct: 281 LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSI 325
Score = 67.8 bits (164), Expect = 9e-10
Identities = 35/104 (33%), Positives = 55/104 (52%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
G Q H + + + + V +AL LY KC SI + +F M + VSWTA+V GY Q
Sbjct: 394 GAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQ 453
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQ 92
G + E +R++ M G PD T ++S+C+ +++G Q
Sbjct: 454 FGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQ 497
>ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|222863951|gb|EEF01082.1|
predicted protein [Populus trichocarpa]
Length = 743
Score = 222 bits (565), Expect = 3e-56
Identities = 105/134 (78%), Positives = 120/134 (89%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
GK+IH IIR+ Y NVFV SAL D+YCKCRS+RYAE VF+RM NKN+VSWTAM+VGYGQ
Sbjct: 289 GKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQ 348
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITV 44
NG+SEEAVR++C+MQR GI PD +TLGS+ISSCANLAS+EEGAQFH QALVSGLIS ITV
Sbjct: 349 NGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITV 408
Query: 43 SNALVTLYGKCGSI 2
SNAL+TLYGKCGSI
Sbjct: 409 SNALITLYGKCGSI 422
Score = 91.7 bits (226), Expect = 6e-17
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 31/165 (18%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIV----------- 257
G+QIH I++ + VFV S+L D+Y K + A VF ++ +N+V
Sbjct: 157 GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLR 216
Query: 256 --------------------SWTAMVVGYGQNGYSEEAVRIYCEMQRMGIVPDGYTLGSL 137
SWT M+ G QNG EA+ ++ +M++ G+ D YT GS+
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSV 276
Query: 136 ISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKCGSI 2
+++C L +++EG + H + SG ++ V +ALV +Y KC S+
Sbjct: 277 LTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSV 321
Score = 76.3 bits (186), Expect = 2e-12
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
G Q H + + + + V +AL LY KC SI + +F M ++ VSWTA+V GY Q
Sbjct: 390 GAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQ 449
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQFHGQALVS-GLISHIT 47
G + E + ++ M G+ PD T +++S+C+ +E G Q+ L G+I
Sbjct: 450 FGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSD 509
Query: 46 VSNALVTLYGKCGSI 2
++ L+G+ G +
Sbjct: 510 HYTCMIDLFGRAGRL 524
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = -1
Query: 358 NVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQNGYSEEAVRIYCEMQ 179
N F + + Y K + + +F M N++ VSW +++ GY G EAV+ Y M
Sbjct: 70 NSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129
Query: 178 RMGIVP-DGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKCGSI 2
+ G++ + T +++ ++ ++ G Q HGQ + G +++ V ++LV +Y K G +
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV 189
>ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546171|gb|EEF47673.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 515
Score = 217 bits (553), Expect = 7e-55
Identities = 102/134 (76%), Positives = 122/134 (91%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
GKQ+HA+IIR++ DNVFV SAL D+YCKC+ +RYAE VF+RMK KN+VSWTA++VGYGQ
Sbjct: 292 GKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYGQ 351
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITV 44
NG+SEEAV+++C+MQR GI PD +TLGS+ISSCANLAS+EEGAQFH +ALVSGLIS ITV
Sbjct: 352 NGFSEEAVKVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISSITV 411
Query: 43 SNALVTLYGKCGSI 2
SNALVTLYGKCGSI
Sbjct: 412 SNALVTLYGKCGSI 425
Score = 91.3 bits (225), Expect = 7e-17
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 31/162 (19%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIV----------- 257
G+QIH +I++ + VFV S L D+Y K + A+ VF M ++N+V
Sbjct: 160 GRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHNTMITGLLK 219
Query: 256 --------------------SWTAMVVGYGQNGYSEEAVRIYCEMQRMGIVPDGYTLGSL 137
SWT M+ G QNG EEA+ + +M+ GI D YT GS+
Sbjct: 220 FGMMEDSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYTFGSV 279
Query: 136 ISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKC 11
+++C L ++ EG Q H + S ++ V +ALV +Y KC
Sbjct: 280 LTACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKC 321
Score = 70.9 bits (172), Expect = 1e-10
Identities = 34/110 (30%), Positives = 57/110 (51%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
G Q H + + + ++ V +AL LY KC SI ++ +F M ++ VSWTA++ GY Q
Sbjct: 393 GAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALISGYAQ 452
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQFHGQAL 74
G + E + ++ M G+ PD T ++ +C+ + G QF L
Sbjct: 453 FGKARETIELFERMLAHGLKPDAVTFIGVLLACSRAGLVARGQQFFDSML 502
Score = 55.5 bits (132), Expect = 5e-06
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = -1
Query: 358 NVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQNGYSEEAVRIYCEMQ 179
N F + + Y K + + +F M N++ VSW ++ GY G +AV+ Y M
Sbjct: 73 NSFSWNTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMM 132
Query: 178 RMGIVP-DGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKCGSI 2
R G+ + T +++ ++ ++ G Q HG + G ++ V + LV +Y K G +
Sbjct: 133 RDGVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLV 192
>ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein
SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 215 bits (547), Expect = 3e-54
Identities = 107/134 (79%), Positives = 118/134 (88%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
GKQIHAYIIRT Y DNVFV SAL D+Y KCRSI+ AETVFRRM KNI+SWTA++VGYGQ
Sbjct: 291 GKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQ 350
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITV 44
NG SEEAVR++ EMQR GI PD YTLGS+ISSCANLAS+EEGAQFH ALVSGL+ +ITV
Sbjct: 351 NGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITV 410
Query: 43 SNALVTLYGKCGSI 2
SNALVTLYGKCGSI
Sbjct: 411 SNALVTLYGKCGSI 424
Score = 97.8 bits (242), Expect = 8e-19
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCK------------------------------- 317
GKQ H I+R + N FV S L D+Y K
Sbjct: 159 GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLR 218
Query: 316 CRSIRYAETVFRRMKNKNIVSWTAMVVGYGQNGYSEEAVRIYCEMQRMGIVPDGYTLGSL 137
C+ + A +F M +++ ++WT MV G+ QNG EA+ I+ M+ GI D YT GS+
Sbjct: 219 CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278
Query: 136 ISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGKCGSI 2
+++C L+++E+G Q H + + ++ V +ALV +Y KC SI
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSI 323
Score = 80.5 bits (197), Expect = 1e-13
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Frame = -1
Query: 403 GKQIHAYIIRTNYMDNVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQ 224
G Q H + + M + V +AL LY KC SI A +F M + VSWTA+V GY Q
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQ 451
Query: 223 NGYSEEAVRIYCEMQRMGIVPDGYTLGSLISSCANLASIEEG-AQFHGQALVSGLISHIT 47
G ++E + ++ +M G+ PDG T ++S+C+ +E+G + FH G++
Sbjct: 452 FGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDD 511
Query: 46 VSNALVTLYGKCGSI 2
++ LY + G +
Sbjct: 512 HYTCMIDLYSRSGKL 526
Score = 57.0 bits (136), Expect = 2e-06
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Frame = -1
Query: 358 NVFVDSALADLYCKCRSIRYAETVFRRMKNKNIVSWTAMVVGYGQNGYSEEAVRIYCEMQ 179
N+F +AL R + E +F M ++IVS+ A++ G+ G +AVR+Y +
Sbjct: 71 NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130
Query: 178 R--MGIVPDGYTLGSLISSCANLASIEEGAQFHGQALVSGLISHITVSNALVTLYGK 14
+ + P T+ +++ + + L G QFH Q L G ++ V + LV +Y K
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAK 187