BLASTX nr result

ID: Bupleurum21_contig00034424 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034424
         (422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313663.1| predicted protein [Populus trichocarpa] gi|1...    62   5e-08
gb|ABK93470.1| unknown [Populus trichocarpa]                           62   6e-08
ref|XP_002328062.1| predicted protein [Populus trichocarpa] gi|1...    62   6e-08
gb|AAS20966.1| 60s acidic ribosomal protein [Hyacinthus orientalis]    59   3e-07
ref|XP_002283025.1| PREDICTED: 60S acidic ribosomal protein P2B ...    59   5e-07

>ref|XP_002313663.1| predicted protein [Populus trichocarpa] gi|118484510|gb|ABK94130.1|
           unknown [Populus trichocarpa]
           gi|118485202|gb|ABK94462.1| unknown [Populus
           trichocarpa] gi|118487376|gb|ABK95516.1| unknown
           [Populus trichocarpa] gi|118488119|gb|ABK95879.1|
           unknown [Populus trichocarpa]
           gi|222850071|gb|EEE87618.1| predicted protein [Populus
           trichocarpa]
          Length = 113

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/86 (47%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -2

Query: 421 GSVGADASDEMIELLLSSVKGKDVSELIASGREKMALALSCSXXXXXXGXXXXXXXXXXX 242
           GSVGADA D+ IELLLSSVKGKD++ELIASGREK+A   S        G           
Sbjct: 28  GSVGADADDDRIELLLSSVKGKDITELIASGREKLASVPSGGGVAVSAGAAPAAAGGAAP 87

Query: 241 XXXXXVDQAA---EESDDDPIRNLFD 173
                 ++     EESDDD   +LFD
Sbjct: 88  AAEAKKEEKVEEKEESDDDMGFSLFD 113


>gb|ABK93470.1| unknown [Populus trichocarpa]
          Length = 114

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = -2

Query: 421 GSVGADASDEMIELLLSSVKGKDVSELIASGREKMA 314
           GSVGADA D+ IELLLSSVKGKD++ELIASGREK+A
Sbjct: 28  GSVGADADDDRIELLLSSVKGKDITELIASGREKLA 63


>ref|XP_002328062.1| predicted protein [Populus trichocarpa] gi|118481307|gb|ABK92597.1|
           unknown [Populus trichocarpa]
           gi|118485702|gb|ABK94701.1| unknown [Populus
           trichocarpa] gi|222837577|gb|EEE75942.1| predicted
           protein [Populus trichocarpa]
          Length = 114

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = -2

Query: 421 GSVGADASDEMIELLLSSVKGKDVSELIASGREKMA 314
           GSVGADA D+ IELLLSSVKGKD++ELIASGREK+A
Sbjct: 28  GSVGADADDDRIELLLSSVKGKDITELIASGREKLA 63


>gb|AAS20966.1| 60s acidic ribosomal protein [Hyacinthus orientalis]
          Length = 114

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = -2

Query: 421 GSVGADASDEMIELLLSSVKGKDVSELIASGREKMA 314
           GSVGADA D+ IELLLS VKGKD++ELIASGREK A
Sbjct: 28  GSVGADAEDDRIELLLSEVKGKDITELIASGREKFA 63


>ref|XP_002283025.1| PREDICTED: 60S acidic ribosomal protein P2B [Vitis vinifera]
           gi|297740089|emb|CBI30271.3| unnamed protein product
           [Vitis vinifera]
          Length = 114

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/36 (77%), Positives = 33/36 (91%)
 Frame = -2

Query: 421 GSVGADASDEMIELLLSSVKGKDVSELIASGREKMA 314
           GSVGA+A D+ IELLLS VKGKD++ELIASGREK+A
Sbjct: 28  GSVGAEADDDRIELLLSEVKGKDITELIASGREKLA 63


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