BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034423
         (538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi...   219   2e-55
ref|XP_002523554.1| pentatricopeptide repeat-containing protein,...   195   3e-48
ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi...   174   8e-42
emb|CBI21441.3| unnamed protein product [Vitis vinifera]              162   4e-38
emb|CBI28135.3| unnamed protein product [Vitis vinifera]              127   1e-27

>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  219 bits (558), Expect = 2e-55
 Identities = 107/174 (61%), Positives = 130/174 (74%), Gaps = 3/174 (1%)
 Frame = -1

Query: 514 LLSTFQL---LQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARL 344
           LLS+FQL   LQ CS S++L  GKQ HQ  I+ GL    FM TKLVQMYADC D+ SA+ 
Sbjct: 20  LLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQA 79

Query: 343 VFDELSHPNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLC 164
           +FD+LS PNVFAWTA+L F SRNG+  +CV+TY EMK+  V PD YV P V RAC + L 
Sbjct: 80  LFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLW 139

Query: 163 LNTGMQIHKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
           L  G+Q+HK+V+I G E ++Q+CNSLIDMYSK GDV S RRVF+ MVERD+LSW
Sbjct: 140 LEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSW 193



 Score = 68.6 bits (166), Expect = 6e-10
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%)
 Frame = -1

Query: 508 STFQLLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATK---LVQMYADCNDIVSARLVF 338
           S   +L  C    +L  G++ H   I   +   SF  +    L+ MY  C  I  A  VF
Sbjct: 294 SLSSVLVSCRHLGALVCGQEIHGYGI-RSVDSSSFYKSAGAALLTMYVKCKRIQDALNVF 352

Query: 337 DELSHPNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLN 158
           + +   +V  W A++       M    ++ + +M+ + +  +   +  V+ AC     L 
Sbjct: 353 ELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPACD----LK 408

Query: 157 TGMQIHKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
           +G Q+H  +        + + N+LI MYSKCG + +A  +F+ M+ RDL+SW
Sbjct: 409 SGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSW 460



 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 1/162 (0%)
 Frame = -1

Query: 499 QLLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHP 320
           ++ + C +   L+ G Q H+  +I G + D  +   L+ MY+   D+ S R VFDE+   
Sbjct: 129 KVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVER 188

Query: 319 NVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRA-CTKSLCLNTGMQI 143
           +V +W ++++    NG     V+    M++    PD      V+ A C   LC +   +I
Sbjct: 189 DVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLC-DEAWEI 247

Query: 142 HKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVER 17
            +++     E N+    +L+  YS+ G+   +  +F  M+ R
Sbjct: 248 FEQI----KEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSR 285


>ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537116|gb|EEF38749.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 611

 Score =  195 bits (496), Expect = 3e-48
 Identities = 93/165 (56%), Positives = 116/165 (70%)
 Frame = -1

Query: 496 LLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHPN 317
           +LQ CS  +SL  GKQ HQQ  + G  KD FM TKL+QMYADC+ + SA+ +FD++  PN
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPN 60

Query: 316 VFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQIHK 137
           V+AWTA+  F  R+GM   CV+ YG MK + V PDNYV P V+RACT+ L    G+ IHK
Sbjct: 61  VYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHK 120

Query: 136 EVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
           +VI+ G E N+Q+CNSLIDMY KCG+  SAR VF  M ERDL SW
Sbjct: 121 DVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSW 165



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 40/165 (24%), Positives = 84/165 (50%)
 Frame = -1

Query: 499 QLLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHP 320
           ++L+ C++    + G   H+  I+ G + +  +   L+ MY  C +  SARLVF+E+   
Sbjct: 101 KVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEER 160

Query: 319 NVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQIH 140
           ++F+W ++++    NG+    V+    M+++   PD      ++ A  +    +   ++ 
Sbjct: 161 DLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVL 220

Query: 139 KEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLS 5
           K++     + N+    +LI  YSK G+   + RVF  M+ R+++S
Sbjct: 221 KQI----EQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVS 261



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
 Frame = -1

Query: 496 LLQHCSKSRSLDHGKQTHQQTIIHGLQKD------SFMATKLVQMYADCNDIVSARLVFD 335
           +L  C    +L  GK+ H     +G + +      S     L+ MYA C  I  A  VF+
Sbjct: 270 VLVSCRHIGALRSGKEIHG----YGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFE 325

Query: 334 ELSHPNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNT 155
            +   ++  W A++       +    ++ + EM+   +  D   +  ++  C        
Sbjct: 326 LMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCDLQYGNPI 385

Query: 154 GMQIHKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
              + K + +  V   V + N++I MY KCG V SA  +F  M  +D++SW
Sbjct: 386 HAYVRKSITLSSV---VTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSW 433


>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  174 bits (441), Expect = 8e-42
 Identities = 79/165 (47%), Positives = 117/165 (70%)
 Frame = -1

Query: 496 LLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHPN 317
           LLQ C   ++L+  KQ H + ++ G   + F  TKL+Q+YAD ND+ SA  +  ++SHPN
Sbjct: 11  LLQAC---KTLNQAKQLHHRILLTGSHHNHFFVTKLIQIYADSNDLRSAVTLLHQISHPN 67

Query: 316 VFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQIHK 137
           VFA+T++L+F SR+G+   C++TY E++ N V PD YV P V++AC +     +G  +HK
Sbjct: 68  VFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLKACAQLSRFGSGRGVHK 127

Query: 136 EVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
           +V++FG E N+Q+ NS++DMYSKCGDV SAR+VF+ M ERD+ SW
Sbjct: 128 DVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERDVFSW 172



 Score = 71.6 bits (174), Expect = 7e-11
 Identities = 42/166 (25%), Positives = 77/166 (46%)
 Frame = -1

Query: 499 QLLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHP 320
           ++L+ C++      G+  H+  ++ G + +  +   ++ MY+ C D+ SAR VFDE+S  
Sbjct: 108 KVLKACAQLSRFGSGRGVHKDVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSER 167

Query: 319 NVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQIH 140
           +VF+W ++++    NG+P   V+  G MK                   K  C        
Sbjct: 168 DVFSWNSMMSGYVWNGLPHKAVEVLGVMK-------------------KDGC-------- 200

Query: 139 KEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
                 G E +V   N+++D Y + G    A RVF  + + +++SW
Sbjct: 201 ------GCEPDVVTWNTVMDAYCRMGQCCEASRVFGEIEDPNVISW 240


>emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  162 bits (409), Expect = 4e-38
 Identities = 74/118 (62%), Positives = 92/118 (77%)
 Frame = -1

Query: 355 SARLVFDELSHPNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACT 176
           SA+ +FD+LS PNVFAWTA+L F SRNG+  +CV+TY EMK+  V PD YV P V RAC 
Sbjct: 415 SAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACG 474

Query: 175 KSLCLNTGMQIHKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
           + L L  G+Q+HK+V+I G E ++Q+CNSLIDMYSK GDV S RRVF+ MVERD+LSW
Sbjct: 475 QLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSW 532



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 29/195 (14%)
 Frame = -1

Query: 499  QLLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHP 320
            ++ + C +   L+ G Q H+  +I G + D  +   L+ MY+   D+ S R VFDE+   
Sbjct: 468  KVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVER 527

Query: 319  NVFAWTAVLAFQSRNGMPA----------DCV-------------------KTYGEMKMN 227
            +V +W ++++   +    A          D V                   + + +M+ +
Sbjct: 528  DVLSWNSMISGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRS 587

Query: 226  RVFPDNYVLPNVIRACTKSLCLNTGMQIHKEVIIFGVEMNVQICNSLIDMYSKCGDVASA 47
             +  +   +  V+ AC     L +G Q+H  +        + + N+LI MYSKCG + +A
Sbjct: 588  GIMNNQITISTVLPACD----LKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTA 643

Query: 46   RRVFNGMVERDLLSW 2
              +F+ M+ RDL+SW
Sbjct: 644  YSIFSNMISRDLVSW 658


>emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  127 bits (318), Expect = 1e-27
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 2/168 (1%)
 Frame = -1

Query: 499  QLLQHCSKSRSLDHGKQTHQQTIIHG--LQKDSFMATKLVQMYADCNDIVSARLVFDELS 326
            +LLQ C   R+L  G+Q H + + +G    K+ ++ TKLV  YA C+    A  +F  L 
Sbjct: 1179 ELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLR 1238

Query: 325  HPNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQ 146
              NVF+W A++  Q R G   D +  + EM+ N VFPDN+VLPNV++AC     +  G  
Sbjct: 1239 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKG 1298

Query: 145  IHKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
            +H  V+  G    V + +SL+DMY KCG +  AR+VF+ MVE+++++W
Sbjct: 1299 VHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTW 1346



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 43/165 (26%), Positives = 84/165 (50%)
 Frame = -1

Query: 496  LLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHPN 317
            +L+ C   + +  GK  H   +  G     F+++ LV MY  C  +  AR VFD +   N
Sbjct: 1283 VLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKN 1342

Query: 316  VFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQIHK 137
            V  W +++    +NG+  + +  + +M++  + P    + + + A      L  G Q H 
Sbjct: 1343 VVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHA 1402

Query: 136  EVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
              I+  ++++  + +S+I+ YSK G +  A  VF+ M+E+D+++W
Sbjct: 1403 IAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTW 1447



 Score = 78.6 bits (192), Expect = 6e-13
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
 Frame = -1

Query: 481  SKSRSLD---HGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFDELSHPNVF 311
            S S +LD    GKQ H   I++ L  D+ + + ++  Y+    I  A LVF  +   +V 
Sbjct: 1386 SASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVV 1445

Query: 310  AWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQIHKEV 131
             W  +++   ++      +     M+   +  D+  L +++ A   +  +  G + H   
Sbjct: 1446 TWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYC 1505

Query: 130  IIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDLLSW 2
            I   +E +V + NS+IDMY+KC  +  AR+VF+   ERDL+ W
Sbjct: 1506 IRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLW 1548



 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 29/104 (27%), Positives = 57/104 (54%)
 Frame = -1

Query: 322  PNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNTGMQI 143
            PN+  WT +++  +++G   + +  + +M+   + P    + +V+ ACT    L  G  I
Sbjct: 1613 PNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAI 1672

Query: 142  HKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVERDL 11
            H  +      ++V +  SL+DMY+KCG +  A++VF+ M  ++L
Sbjct: 1673 HGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKEL 1716



 Score = 58.5 bits (140), Expect = 6e-07
 Identities = 39/167 (23%), Positives = 77/167 (46%)
 Frame = -1

Query: 520  FKLLSTFQLLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLV 341
            F  ++   +L   + + ++  GK+ H   I   L+ D  +A  ++ MYA C  I  AR V
Sbjct: 1477 FDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKV 1536

Query: 340  FDELSHPNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCL 161
            FD  +  ++  W  +LA  ++ G+  + +K + +M+ + V P+     +VI    ++  +
Sbjct: 1537 FDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQV 1596

Query: 160  NTGMQIHKEVIIFGVEMNVQICNSLIDMYSKCGDVASARRVFNGMVE 20
            N    +  ++   G + N+    +LI   ++ G    A   F  M E
Sbjct: 1597 NEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQE 1643



 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 34/160 (21%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
 Frame = -1

Query: 514  LLSTFQLLQHCSKSRSLDHGKQTHQQTIIHGLQKDSFMATKLVQMYADCNDIVSARLVFD 335
            + S   +L  C+   SL +G+  H     H       +AT LV MYA C  I  A+ VF 
Sbjct: 1650 IASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFH 1709

Query: 334  ELSHPNVFAWTAVLAFQSRNGMPADCVKTYGEMKMNRVFPDNYVLPNVIRACTKSLCLNT 155
             +S   +  + A+++  + +G   + +  +  ++   + PD+    +++ AC+ +  +N 
Sbjct: 1710 MMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNE 1769

Query: 154  GMQIHKEVII-FGVEMNVQICNSLIDMYSKCGDVASARRV 38
            G+ +  +++    +   ++    ++ + S+CG++  A R+
Sbjct: 1770 GLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRL 1809