BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034284
         (772 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001312187.1| photosystem II M protein [Cycas taitungensis...    74   3e-11
ref|YP_654205.1| photosystem II M protein [Oryza sativa Indica G...    73   8e-11
ref|YP_740111.1| photosystem II protein M [Daucus carota] gi|122...    72   1e-10
gb|ADD63027.1| photosystem II protein M [Potamophila parviflora]       67   1e-10
gb|AAS46110.1| photosystem II M protein [Oryza sativa Japonica G...    67   1e-10

>ref|YP_001312187.1| photosystem II M protein [Cycas taitungensis]
           gi|452848986|ref|YP_007474665.1| photosystem II M
           protein (chloroplast) [Cycas revoluta]
           gi|149941504|dbj|BAF64928.1| photosystem II M protein
           (chloroplast) [Cycas taitungensis]
           gi|372863141|gb|AEX99214.1| photosystem II M protein
           (chloroplast) [Cycas revoluta]
          Length = 97

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 52/94 (55%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
 Frame = -3

Query: 767 FATTNLFDSSDIVIHDIDPIQNH*EIIHSLNLRIYS--RKIYHLYGIKSRVIV-K*KKDE 597
           F  +N  D SD  I  ID I+       S+N  IY   + I+HLY IKSRVIV + + D+
Sbjct: 5   FPLSNSLDPSDFAIQ-IDSIRPISYSRDSIN-HIYGSLKGIHHLYEIKSRVIVERSENDK 62

Query: 596 IMEVNILAFIATALFILVPTAFLLIIYVKTESQN 495
           I EVNILAFIA  LFI VPTAFLLIIYVKT S++
Sbjct: 63  ITEVNILAFIAIVLFISVPTAFLLIIYVKTVSES 96


>ref|YP_654205.1| photosystem II M protein [Oryza sativa Indica Group]
           gi|42795478|gb|AAS46045.1| photosystem II M protein
           [Oryza sativa Indica Group]
          Length = 68

 Score = 72.8 bits (177), Expect = 8e-11
 Identities = 33/50 (66%), Positives = 37/50 (74%)
 Frame = -2

Query: 645 SLWD*IPSYCEVKKR*DYGSKYSCIYCYCTVHSSSYCFSAYHLCKNRKSK 496
           S WD IPSYCE K+   YGS+YS IYCYC VHSSSYC   Y+LCKN + K
Sbjct: 21  SPWDYIPSYCEKKR--GYGSQYSRIYCYCIVHSSSYCLFTYYLCKNSQPK 68


>ref|YP_740111.1| photosystem II protein M [Daucus carota]
           gi|122233839|sp|Q0G9W8.1|PSBM_DAUCA RecName:
           Full=Photosystem II reaction center protein M;
           Short=PSII-M gi|113200902|gb|ABI32418.1| photosystem II
           protein M [Daucus carota]
          Length = 38

 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 36/38 (94%), Positives = 38/38 (100%)
 Frame = -3

Query: 593 MEVNILAFIATALFILVPTAFLLIIYVKTESQNKNQKD 480
           MEVNILAFIATALFILVPTAFLLIIYVKTE+QNKN+KD
Sbjct: 1   MEVNILAFIATALFILVPTAFLLIIYVKTETQNKNKKD 38


>gb|ADD63027.1| photosystem II protein M [Potamophila parviflora]
          Length = 69

 Score = 67.0 bits (162), Expect(2) = 1e-10
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = -3

Query: 608 KKDEIMEVNILAFIATALFILVPTAFLLIIYVKTESQN 495
           +K E+MEVNILAFIATALFILVPTAFLLIIYVKT SQN
Sbjct: 31  EKKEVMEVNILAFIATALFILVPTAFLLIIYVKTVSQN 68



 Score = 25.4 bits (54), Expect(2) = 1e-10
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 645 SLWD*IPSYCEVKK 604
           S WD IPSYCE K+
Sbjct: 21  SPWDYIPSYCEKKE 34


>gb|AAS46110.1| photosystem II M protein [Oryza sativa Japonica Group]
           gi|42795608|gb|AAS46173.1| photosystem II M protein
           [Oryza sativa Japonica Group]
           gi|290790563|gb|ADD62823.1| photosystem II protein M
           [Oryza sativa Japonica Group]
           gi|290790632|gb|ADD62891.1| photosystem II protein M
           [Oryza meridionalis] gi|290790701|gb|ADD62959.1|
           photosystem II protein M [Oryza australiensis]
          Length = 69

 Score = 67.0 bits (162), Expect(2) = 1e-10
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = -3

Query: 608 KKDEIMEVNILAFIATALFILVPTAFLLIIYVKTESQN 495
           +K E+MEVNILAFIATALFILVPTAFLLIIYVKT SQN
Sbjct: 31  EKKEVMEVNILAFIATALFILVPTAFLLIIYVKTVSQN 68



 Score = 25.4 bits (54), Expect(2) = 1e-10
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 645 SLWD*IPSYCEVKK 604
           S WD IPSYCE K+
Sbjct: 21  SPWDYIPSYCEKKE 34