BLASTX nr result

ID: Bupleurum21_contig00034277 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034277
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             149   2e-34
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...   147   7e-34
gb|ABA93980.1| retrotransposon protein, putative, Ty3-gypsy subc...   147   9e-34
emb|CAN74823.1| hypothetical protein VITISV_034594 [Vitis vinifera]   146   1e-33
emb|CAN79433.1| hypothetical protein VITISV_043195 [Vitis vinifera]   146   2e-33

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  149 bits (376), Expect = 2e-34
 Identities = 70/118 (59%), Positives = 86/118 (72%)
 Frame = -3

Query: 358  GISEEVALHHLSVXXXXXXXXXXXRNFAPERQKAIDQEINKLLAADLICEVTYPEWLANV 179
            GI   +  H L+V           R   PER +A+++E+ KLL A  I EV YPEWLAN 
Sbjct: 806  GIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANP 865

Query: 178  VLVKKANGKWRMCVDYTDLNAACPKDSYPLPSIDQLIDATAGHRMISFMDAFSGYNQI 5
            V+VKK NGKWR+CVDYTDLN ACPKDSYPLP ID+L++AT+G+ ++SFMDAFSGYNQI
Sbjct: 866  VVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQI 923


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score =  147 bits (372), Expect = 7e-34
 Identities = 69/118 (58%), Positives = 86/118 (72%)
 Frame = -3

Query: 358 GISEEVALHHLSVXXXXXXXXXXXRNFAPERQKAIDQEINKLLAADLICEVTYPEWLANV 179
           GI  EVA H L+V           R   PER KA++ E++KLL A  I EV YPEWLAN 
Sbjct: 479 GIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLANP 538

Query: 178 VLVKKANGKWRMCVDYTDLNAACPKDSYPLPSIDQLIDATAGHRMISFMDAFSGYNQI 5
           V+VKK N KWR+C+D+TDLN ACPKDS+PLP ID++++AT G+ ++SFMDAFSGYNQI
Sbjct: 539 VVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQI 596


>gb|ABA93980.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1567

 Score =  147 bits (371), Expect = 9e-34
 Identities = 70/118 (59%), Positives = 88/118 (74%)
 Frame = -3

Query: 358 GISEEVALHHLSVXXXXXXXXXXXRNFAPERQKAIDQEINKLLAADLICEVTYPEWLANV 179
           G+  EV  H L V           R FAP+R++AI +E+NKLL A  I EV +PEWLAN 
Sbjct: 636 GVPREVIEHKLMVRPDAKLVKQRLRKFAPDRKQAIREELNKLLKAGFIREVLHPEWLANP 695

Query: 178 VLVKKANGKWRMCVDYTDLNAACPKDSYPLPSIDQLIDATAGHRMISFMDAFSGYNQI 5
           V+V+KANGKWRMCVD+TDLN ACPKD +PLP IDQL+D+TAG  ++SF+DA+SGY+QI
Sbjct: 696 VMVRKANGKWRMCVDFTDLNKACPKDHFPLPRIDQLVDSTAGCELLSFLDAYSGYHQI 753


>emb|CAN74823.1| hypothetical protein VITISV_034594 [Vitis vinifera]
          Length = 952

 Score =  146 bits (369), Expect = 1e-33
 Identities = 70/118 (59%), Positives = 87/118 (73%)
 Frame = -3

Query: 358 GISEEVALHHLSVXXXXXXXXXXXRNFAPERQKAIDQEINKLLAADLICEVTYPEWLANV 179
           GI   +A H L+V           R F PERQ+ I  EI+KLL A  I EV+YP+WLANV
Sbjct: 3   GIHPSIASHKLNVFSTARPVRQRIRRFHPERQRVIRNEIDKLLEAGFIREVSYPDWLANV 62

Query: 178 VLVKKANGKWRMCVDYTDLNAACPKDSYPLPSIDQLIDATAGHRMISFMDAFSGYNQI 5
           V+V K  GKWR+CVDYT+LN ACPKDS+PLP IDQ++D+T+G RM+SF+DAFSGY+QI
Sbjct: 63  VVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQRMLSFLDAFSGYHQI 120


>emb|CAN79433.1| hypothetical protein VITISV_043195 [Vitis vinifera]
          Length = 989

 Score =  146 bits (368), Expect = 2e-33
 Identities = 69/118 (58%), Positives = 87/118 (73%)
 Frame = -3

Query: 358 GISEEVALHHLSVXXXXXXXXXXXRNFAPERQKAIDQEINKLLAADLICEVTYPEWLANV 179
           GI   +A H+L+V           R F P+RQ+ I  EINKLL A  I EV+YP+WLANV
Sbjct: 3   GIHPSIASHNLNVFPAARPIRQKIRRFHPDRQRVIQDEINKLLKAGFIREVSYPDWLANV 62

Query: 178 VLVKKANGKWRMCVDYTDLNAACPKDSYPLPSIDQLIDATAGHRMISFMDAFSGYNQI 5
           V+V K  GKWR+CVDYT+LN ACPKDS+PLP IDQ++D+T+G  M+SF+DAFSGY+QI
Sbjct: 63  VVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120


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