BLASTX nr result

ID: Bupleurum21_contig00034242 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034242
         (292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527531.1| DNA binding protein, putative [Ricinus commu...   106   2e-21
ref|XP_002263205.1| PREDICTED: PHD finger protein MALE MEIOCYTE ...   104   9e-21
ref|XP_002533478.1| DNA binding protein, putative [Ricinus commu...   103   2e-20
ref|XP_002311539.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19
ref|XP_002301666.1| predicted protein [Populus trichocarpa] gi|2...    98   8e-19

>ref|XP_002527531.1| DNA binding protein, putative [Ricinus communis]
           gi|223533081|gb|EEF34840.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 679

 Score =  106 bits (264), Expect = 2e-21
 Identities = 57/99 (57%), Positives = 69/99 (69%), Gaps = 4/99 (4%)
 Frame = +3

Query: 6   PGEVVLVSPSMTVGELKLVAQSALRDTYCLMQDFVVT--QIGGLKALNDG--ILVCSVLK 173
           PGE V+     TV ELKL  Q ALRDTYC+M +FVV   +IGGL A  +G  +L C  L+
Sbjct: 518 PGEPVMAPECATVFELKLTVQCALRDTYCVMDNFVVNDIEIGGLVAREEGQDLLKCG-LE 576

Query: 174 NGGQVWVRGSGLDLDTELRYEGGPDDGKVDCVCGTTSDD 290
           +G +VWVRGSGLDLDT+LRY+GG +D  VDC CG   DD
Sbjct: 577 DGMKVWVRGSGLDLDTKLRYQGGDNDWTVDCKCGAKDDD 615


>ref|XP_002263205.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Vitis
           vinifera] gi|147772045|emb|CAN73422.1| hypothetical
           protein VITISV_032904 [Vitis vinifera]
           gi|296087078|emb|CBI33452.3| unnamed protein product
           [Vitis vinifera]
          Length = 683

 Score =  104 bits (259), Expect = 9e-21
 Identities = 44/95 (46%), Positives = 66/95 (69%)
 Frame = +3

Query: 6   PGEVVLVSPSMTVGELKLVAQSALRDTYCLMQDFVVTQIGGLKALNDGILVCSVLKNGGQ 185
           PGE ++V P  TVGELK   +  LRDTYC+M+  VVT+I  ++ + D  ++   +++G +
Sbjct: 522 PGEFIVVPPYATVGELKETVERTLRDTYCIMEQVVVTEIEDMEGMTDEEVLFGTIESGSE 581

Query: 186 VWVRGSGLDLDTELRYEGGPDDGKVDCVCGTTSDD 290
           VW+RG+G+DL+ EL+YEGG D+ +V C CG   DD
Sbjct: 582 VWMRGTGMDLEAELKYEGGSDNWRVSCECGALDDD 616


>ref|XP_002533478.1| DNA binding protein, putative [Ricinus communis]
           gi|223526671|gb|EEF28910.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 698

 Score =  103 bits (256), Expect = 2e-20
 Identities = 47/95 (49%), Positives = 70/95 (73%)
 Frame = +3

Query: 6   PGEVVLVSPSMTVGELKLVAQSALRDTYCLMQDFVVTQIGGLKALNDGILVCSVLKNGGQ 185
           PGE+V++    TV ELK  A++ALRDTYC+M++F VT+I  ++ L D  L+   +++G +
Sbjct: 528 PGEIVVLPLHSTVAELKQAAENALRDTYCIMENFEVTEINQMEELMDEELLFGSVESGAE 587

Query: 186 VWVRGSGLDLDTELRYEGGPDDGKVDCVCGTTSDD 290
           +++RG+G+DL+TELRYE GPD+ KV C CG   DD
Sbjct: 588 LFMRGNGMDLNTELRYESGPDNWKVRCQCGAEDDD 622


>ref|XP_002311539.1| predicted protein [Populus trichocarpa] gi|222851359|gb|EEE88906.1|
           predicted protein [Populus trichocarpa]
          Length = 662

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 55/99 (55%), Positives = 66/99 (66%), Gaps = 4/99 (4%)
 Frame = +3

Query: 6   PGEVVLVSPSMTVGELKLVAQSALRDTYCLMQDFVV--TQIGGL--KALNDGILVCSVLK 173
           PGE+++V    TV ELKL+ Q ALRDTY +M  F V   QIG +  K   DG++ C V +
Sbjct: 523 PGELLVVPQYATVDELKLMVQCALRDTYYVMDKFAVKDVQIGKIEEKEYQDGVM-CEV-E 580

Query: 174 NGGQVWVRGSGLDLDTELRYEGGPDDGKVDCVCGTTSDD 290
            G QVWVRG GLDLDT+LRY+GG DD  VDC CG   DD
Sbjct: 581 QGVQVWVRGCGLDLDTKLRYQGGADDWTVDCGCGAKDDD 619


>ref|XP_002301666.1| predicted protein [Populus trichocarpa] gi|222843392|gb|EEE80939.1|
           predicted protein [Populus trichocarpa]
          Length = 591

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 43/95 (45%), Positives = 70/95 (73%)
 Frame = +3

Query: 6   PGEVVLVSPSMTVGELKLVAQSALRDTYCLMQDFVVTQIGGLKALNDGILVCSVLKNGGQ 185
           PGE++++    +V ELK  A+SALRDTYC+++ FVV +I  ++ L+D  L+C  +++G +
Sbjct: 456 PGEIIVLPLHASVLELKQEAESALRDTYCMLERFVVIEIEHMENLDDKDLLCKFVESGAE 515

Query: 186 VWVRGSGLDLDTELRYEGGPDDGKVDCVCGTTSDD 290
           ++V+G G+D++++LRYEGG D+ KV C CG   DD
Sbjct: 516 IFVKGYGMDINSQLRYEGGSDNWKVRCECGACDDD 550


Top