BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034132
         (341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308024.1| predicted protein [Populus trichocarpa] gi|2...   130   1e-28
ref|XP_002529510.1| pentatricopeptide repeat-containing protein,...   130   1e-28
emb|CBI29825.3| unnamed protein product [Vitis vinifera]              128   5e-28
ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containi...   128   5e-28
ref|NP_178072.1| pentatricopeptide repeat-containing protein [Ar...   118   4e-25

>ref|XP_002308024.1| predicted protein [Populus trichocarpa] gi|222854000|gb|EEE91547.1|
           predicted protein [Populus trichocarpa]
          Length = 789

 Score =  130 bits (327), Expect = 1e-28
 Identities = 61/113 (53%), Positives = 79/113 (69%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSIL 160
           + A++ F  + +F C PD++TYN+IL +            VY  M+K NC PN +TFSIL
Sbjct: 143 DKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSIL 202

Query: 159 INGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKLFE 1
           I+GLCKSGN KDAL LFDEM  RGI+PD  TY V+ISGLC + R+DDAY+LF+
Sbjct: 203 IDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFD 255



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/110 (31%), Positives = 63/110 (57%)
 Frame = -3

Query: 333 AVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSILIN 154
           A++   ++ E G  PD   YN+++              +   + + +C PN  T+SILI+
Sbjct: 355 ALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILIS 414

Query: 153 GLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKLF 4
           G+C++G T+DA ++F+EM+  G  P  +T+  +I GLC  G+++ A+ LF
Sbjct: 415 GMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLF 464



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 30/62 (48%), Positives = 41/62 (66%)
 Frame = -3

Query: 186 PNCSTFSILINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKL 7
           P   T++IL+NG CK GN   A KLF EM  +G+ PD +TY  +I+GL    R +DAYK+
Sbjct: 522 PGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKV 581

Query: 6   FE 1
           F+
Sbjct: 582 FD 583



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)
 Frame = -3

Query: 216 YNMMLKSNCDPNCSTFSILINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCL 37
           Y  M++ N  P+   ++I++ GL ++G  +DAL+L +EM   G++PD + Y V+I G C 
Sbjct: 324 YRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCD 383

Query: 36  AGRIDDAYKL 7
            G + +A  L
Sbjct: 384 MGLLSEARSL 393


>ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531026|gb|EEF32879.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 804

 Score =  130 bits (326), Expect = 1e-28
 Identities = 61/112 (54%), Positives = 82/112 (73%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSIL 160
           E AV++F  + +F CKPD+FTYN +LH+            +YN MLK NC PN +TFSIL
Sbjct: 143 EKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSIL 202

Query: 159 INGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKLF 4
           I+G+CKSG T++AL++FDEM  R I+P++ITYT+IISGLC A + D AY+LF
Sbjct: 203 IDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLF 254



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
 Frame = -3

Query: 216 YNMMLK---SNCDPNCSTFSILINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISG 46
           YN++++   S   PN  T++ILI+G CK+GN   A KLF E+ ++G+ PD +TY  +I+G
Sbjct: 509 YNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLING 568

Query: 45  LCLAGRIDDAYKLFE 1
           L  A R +DA+ + +
Sbjct: 569 LLSANREEDAFTVLD 583



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 33/101 (32%), Positives = 53/101 (52%)
 Frame = -3

Query: 306 EFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSILINGLCKSGNTK 127
           E G  PD   YN ++              ++  + K++C  +  T++ILI G+C+SG   
Sbjct: 364 ERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVG 423

Query: 126 DALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKLF 4
           DA ++F+EM+  G  P  +T+  +I G C AG I+ A  LF
Sbjct: 424 DAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLF 464



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/70 (40%), Positives = 42/70 (60%)
 Frame = -3

Query: 216 YNMMLKSNCDPNCSTFSILINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCL 37
           Y  M + N  P+   ++I++ GL K+G  KDAL+L +EM  RG++PD   Y  +I G C 
Sbjct: 324 YRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCD 383

Query: 36  AGRIDDAYKL 7
            G +D+A  L
Sbjct: 384 LGLLDEAKSL 393



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 33/111 (29%), Positives = 52/111 (46%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSIL 160
           ++A   F  + + GC PD  TYN +LH             +     K     +   +S L
Sbjct: 248 DVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCL 307

Query: 159 INGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKL 7
           I+GL ++   +DA   + +M    I PD I YT+++ GL  AG+  DA +L
Sbjct: 308 IDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRL 358


>emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  128 bits (321), Expect = 5e-28
 Identities = 61/111 (54%), Positives = 79/111 (71%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSIL 160
           E AV++F K+ +FGCKPD+FTYN ILH+            VYN MLK N +PN +TF IL
Sbjct: 148 EKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVIL 207

Query: 159 INGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKL 7
           +NGLCK+G T DALK+FDEM  +GI P+ + YT+I+SGLC A R DD ++L
Sbjct: 208 LNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRL 258



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/112 (27%), Positives = 60/112 (53%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSIL 160
           + A++    + + G  PD + YN ++              +   + K++C P   T++IL
Sbjct: 358 DYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTIL 417

Query: 159 INGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKLF 4
           I G+C++G   +A ++F++M+  G  P  +T+  +I GLC AG +++A  LF
Sbjct: 418 ICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF 469


>ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  128 bits (321), Expect = 5e-28
 Identities = 61/111 (54%), Positives = 79/111 (71%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSIL 160
           E AV++F K+ +FGCKPD+FTYN ILH+            VYN MLK N +PN +TF IL
Sbjct: 148 EKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVIL 207

Query: 159 INGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKL 7
           +NGLCK+G T DALK+FDEM  +GI P+ + YT+I+SGLC A R DD ++L
Sbjct: 208 LNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRL 258



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/112 (27%), Positives = 60/112 (53%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXVYNMMLKSNCDPNCSTFSIL 160
           + A++    + + G  PD + YN ++              +   + K++C P   T++IL
Sbjct: 358 DYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTIL 417

Query: 159 INGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKLF 4
           I G+C++G   +A ++F++M+  G  P  +T+  +I GLC AG +++A  LF
Sbjct: 418 ICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF 469



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 24/62 (38%), Positives = 39/62 (62%)
 Frame = -3

Query: 186 PNCSTFSILINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKL 7
           P+  T+++LING CK+ N   A KLF E+ ++G  PD +TY  +I G     R +DA+++
Sbjct: 527 PDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRV 586

Query: 6   FE 1
            +
Sbjct: 587 LD 588


>ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g79540 gi|4835755|gb|AAD30222.1|AC007202_4 Contains
           similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
           gi|332198140|gb|AEE36261.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  118 bits (296), Expect = 4e-25
 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
 Frame = -3

Query: 339 EMAVDAFAKIGEFGCKPDLFTYNLILHIXXXXXXXXXXXXV-YNMMLKSNCDPNCSTFSI 163
           E AV++F ++ EF C+PD+FTYN+IL +              YN MLK NC PN  TF I
Sbjct: 144 EKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGI 203

Query: 162 LINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKLF 4
           L++GL K G T DA K+FD+M  RGI P+ +TYT++ISGLC  G  DDA KLF
Sbjct: 204 LMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLF 256



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 25/61 (40%), Positives = 44/61 (72%)
 Frame = -3

Query: 186 PNCSTFSILINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCLAGRIDDAYKL 7
           P+  ++++LING C++G+   ALKL + + ++G+ PD +TY  +I+GL   GR ++A+KL
Sbjct: 515 PDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKL 574

Query: 6   F 4
           F
Sbjct: 575 F 575



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/70 (41%), Positives = 39/70 (55%)
 Frame = -3

Query: 216 YNMMLKSNCDPNCSTFSILINGLCKSGNTKDALKLFDEMDVRGIMPDEITYTVIISGLCL 37
           Y  MLK N  P+   ++ILI GL K+G  +DALKL   M  +GI PD   Y  +I  LC 
Sbjct: 326 YANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCG 385

Query: 36  AGRIDDAYKL 7
            G +++   L
Sbjct: 386 RGLLEEGRSL 395