BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034117
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...   100   2e-19
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...    98   6e-19
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...    98   6e-19
ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...    92   4e-17

>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329267|gb|EFH59686.1| nucleic acid binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score =  100 bits (248), Expect = 2e-19
 Identities = 58/117 (49%), Positives = 72/117 (61%)
 Frame = +1

Query: 19  FNTATVYFRTREGMQKALQATDLTVKGAIVAMVTASSPESQSKNITIPCLIGDPDVPAAL 198
           +  A + F T   ++KAL+   +TV     A+V A+S E   + I IP LIGDPDVP AL
Sbjct: 524 YKDALLTFETNTAVKKALEKGRVTVMNNN-AVVEATSQEDMVERICIPDLIGDPDVPVAL 582

Query: 199 VKNPMRTVAIKHLTCKICPKHIEKALAFCESKISGIFLGSSHSVAYVEFETEDGKDR 369
           VK P RTV I  LT       I++AL FC S IS   LGSS + A+VEFETEDGK+R
Sbjct: 583 VKEPSRTVKIHPLTHDFSSNQIKEALKFCRSNISKFILGSSRTDAFVEFETEDGKER 639


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332643237|gb|AEE76758.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 57/117 (48%), Positives = 71/117 (60%)
 Frame = +1

Query: 19  FNTATVYFRTREGMQKALQATDLTVKGAIVAMVTASSPESQSKNITIPCLIGDPDVPAAL 198
           +  A + F T   ++KAL+   +TV      +V A+S E   + I IP LIGDPDVP AL
Sbjct: 510 YKDALLTFETNTAVKKALKKGHVTVMN-YNTVVEATSQEDMVERICIPDLIGDPDVPVAL 568

Query: 199 VKNPMRTVAIKHLTCKICPKHIEKALAFCESKISGIFLGSSHSVAYVEFETEDGKDR 369
           VK P RTV I  LT       I++AL FC S IS   LGSS + A+VEFETEDGK+R
Sbjct: 569 VKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKER 625


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|11994322|dbj|BAB02281.1| unnamed protein product
           [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 57/117 (48%), Positives = 71/117 (60%)
 Frame = +1

Query: 19  FNTATVYFRTREGMQKALQATDLTVKGAIVAMVTASSPESQSKNITIPCLIGDPDVPAAL 198
           +  A + F T   ++KAL+   +TV      +V A+S E   + I IP LIGDPDVP AL
Sbjct: 550 YKDALLTFETNTAVKKALKKGHVTVMN-YNTVVEATSQEDMVERICIPDLIGDPDVPVAL 608

Query: 199 VKNPMRTVAIKHLTCKICPKHIEKALAFCESKISGIFLGSSHSVAYVEFETEDGKDR 369
           VK P RTV I  LT       I++AL FC S IS   LGSS + A+VEFETEDGK+R
Sbjct: 609 VKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKER 665


>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 52/114 (45%), Positives = 75/114 (65%)
 Frame = +1

Query: 28  ATVYFRTREGMQKALQATDLTVKGAIVAMVTASSPESQSKNITIPCLIGDPDVPAALVKN 207
           A ++F TR+G+ KAL+  ++ +K +   +   +S       I+IP LIGD D+  ALVK+
Sbjct: 448 AFLHFETRQGLHKALEKPEVLIKNSNAFIHDTAS------RISIPNLIGDIDISVALVKH 501

Query: 208 PMRTVAIKHLTCKICPKHIEKALAFCESKISGIFLGSSHSVAYVEFETEDGKDR 369
           P RTV IK LT  I    +++AL+FC S I+ +FLG+S S AYVEFE+ED K+R
Sbjct: 502 PTRTVKIKQLTDDISSHQLKEALSFCRSGIN-VFLGASSSNAYVEFESEDAKER 554