BLASTX nr result
ID: Bupleurum21_contig00034114
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00034114
(366 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding pr... 119 3e-25
ref|XP_002519416.1| polyadenylate-binding protein, putative [Ric... 112 2e-23
ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding pr... 108 4e-22
ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding pr... 107 8e-22
emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera] 107 1e-21
>ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera] gi|297740018|emb|CBI30200.3| unnamed protein
product [Vitis vinifera]
Length = 634
Score = 119 bits (297), Expect = 3e-25
Identities = 59/97 (60%), Positives = 77/97 (79%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
+TD L++AFSEF + +SVR+CRD ++GRSL Y YVNF SP+D + AI KNH +L+G
Sbjct: 23 ITDGLLFDAFSEFKSLASVRICRDSSSGRSL--CYGYVNFISPQDASHAIEAKNHTMLHG 80
Query: 188 KVIRVMRSNRDPIAIKSGFGNVFVKNLDESVDNIKLQ 298
KVIRVM S+RDP A +SG GNVFVKNL +S+DN++LQ
Sbjct: 81 KVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQ 117
Score = 47.4 bits (111), Expect(2) = 2e-06
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
VT+ L E F EF +S+ + +D G S G+ +V NF SPED A+ N L
Sbjct: 202 VTEEALREKFFEFGKIASLVISKD-ENGMSRGFGFV--NFESPEDAKRALEALNGLQLGS 258
Query: 188 KVIRVMRS----------------NRDPIAIKSGFGNVFVKNLDESVDNIKLQTAVKWC 316
KV+ V R+ R+ +K NV+VKN+D++V++ L+ C
Sbjct: 259 KVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVC 317
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 309 NGVMFRGKPLYVAIVQTKE 365
+G MF KPLYVAI Q KE
Sbjct: 355 HGYMFHRKPLYVAIAQRKE 373
>ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding
protein, putative [Ricinus communis]
Length = 632
Score = 112 bits (281), Expect = 2e-23
Identities = 60/97 (61%), Positives = 72/97 (74%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
V+D L +AFSEF T +SVRVCRD +TGRSL Y YVNF SPED AI KNH L G
Sbjct: 24 VSDGQLVDAFSEFNTLASVRVCRDSSTGRSL--CYGYVNFISPEDAIRAIETKNHTPLNG 81
Query: 188 KVIRVMRSNRDPIAIKSGFGNVFVKNLDESVDNIKLQ 298
K++RVM S+RDP A ++G GNV+VKNL ES+DN+ LQ
Sbjct: 82 KLMRVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQ 118
Score = 45.8 bits (107), Expect(2) = 5e-06
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
+T+ L E FSEF SV + RD G S G+ +V NF +P+D A+ N L
Sbjct: 203 ITEELLQEKFSEFGKIVSVAIARDEC-GSSRGFGFV--NFENPDDARWAMERMNGTELGS 259
Query: 188 KVIRV----MRSNRDPI------------AIKSGFGNVFVKNLDESVDNIKLQTAVKWC 316
KV+ V R+ R+ I K NV+VKN+D+ V + +L+ C
Sbjct: 260 KVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQC 318
Score = 29.3 bits (64), Expect(2) = 5e-06
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 309 NGVMFRGKPLYVAIVQTKE 365
+G MF KPLYVAI Q KE
Sbjct: 356 HGYMFHRKPLYVAIAQRKE 374
>ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 108 bits (270), Expect = 4e-22
Identities = 57/101 (56%), Positives = 72/101 (71%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
V+DNHL +AFS+F + +SVRVC+D +TG+SL Y YVNF SP+D AI +KN+ L G
Sbjct: 23 VSDNHLVDAFSDFESLASVRVCKDSSTGKSL--CYGYVNFVSPQDAIRAIELKNNSTLNG 80
Query: 188 KVIRVMRSNRDPIAIKSGFGNVFVKNLDESVDNIKLQTAVK 310
K +RVM S RDP A K+ GN+FVKNL ES+DN LQ K
Sbjct: 81 KAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFK 121
>ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 107 bits (268), Expect = 8e-22
Identities = 57/101 (56%), Positives = 72/101 (71%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
V+D+HL +AFSEF + +SVRVC+D +TG+SL Y Y+NF SP+D AI +KN+ L G
Sbjct: 23 VSDSHLVDAFSEFKSLASVRVCKDSSTGKSL--CYGYLNFVSPQDAIRAIELKNNSTLNG 80
Query: 188 KVIRVMRSNRDPIAIKSGFGNVFVKNLDESVDNIKLQTAVK 310
K +RVM S RDP A KS GN+FVKNL ES+DN LQ K
Sbjct: 81 KAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFK 121
>emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 107 bits (266), Expect = 1e-21
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 20/117 (17%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
+TD L++AFSEF + +SVR+CRD ++GRSL Y YVNF SP+D + AI KNH +L+G
Sbjct: 23 ITDGLLFDAFSEFKSLASVRICRDSSSGRSL--CYGYVNFISPQDASHAIEAKNHTMLHG 80
Query: 188 KVIRVMRSNRDPIAIKSGFGNVFVK--------------------NLDESVDNIKLQ 298
KVIRVM S+RDP A +SG GNVFVK NL +S+DN++LQ
Sbjct: 81 KVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSDSIDNVRLQ 137
Score = 47.4 bits (111), Expect(2) = 2e-06
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Frame = +2
Query: 8 VTDNHLYEAFSEFPTFSSVRVCRDYATGRSLGYVYVYVNFHSPEDVNLAIAMKNHFVLYG 187
VT+ L E F EF +S+ + +D G S G+ +V NF SPED A+ N L
Sbjct: 222 VTEEALREKFFEFGKIASLVISKD-ENGMSRGFGFV--NFESPEDAKRALEALNGLQLGS 278
Query: 188 KVIRVMRS----------------NRDPIAIKSGFGNVFVKNLDESVDNIKLQTAVKWC 316
KV+ V R+ R+ +K NV+VKN+D++V++ L+ C
Sbjct: 279 KVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVC 337
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 309 NGVMFRGKPLYVAIVQTKE 365
+G MF KPLYVAI Q KE
Sbjct: 375 HGYMFHRKPLYVAIAQRKE 393