BLASTX nr result

ID: Bupleurum21_contig00034056 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034056
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634307.1| PREDICTED: uncharacterized protein LOC100853...    87   1e-15
ref|XP_002284718.1| PREDICTED: uncharacterized protein LOC100250...    83   2e-14
ref|XP_002923628.1| PREDICTED: zinc finger RNA-binding protein 2...    62   6e-08
gb|EFB13563.1| hypothetical protein PANDA_012802 [Ailuropoda mel...    62   6e-08
ref|XP_001659016.1| double-stranded RNA-binding protein zn72d [A...    59   5e-07

>ref|XP_003634307.1| PREDICTED: uncharacterized protein LOC100853199 [Vitis vinifera]
           gi|297733926|emb|CBI15173.3| unnamed protein product
           [Vitis vinifera]
          Length = 238

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
 Frame = +3

Query: 21  CDLCQVLCSNEDALKMHYQGQKHKARLQVTETG-----RDTATERPWCGLCEIWCMNEDA 185
           CDLC++ C N+ +L+ H++G+KH+  +Q  E G     R T   + +C LC++WCM+E A
Sbjct: 141 CDLCKIWCINKYSLEQHFKGKKHQDNVQELELGGKEGQRKTNQVKLYCELCKLWCMDEYA 200

Query: 186 FNQHLKGQKHITRLYSMQEKEMA 254
           FNQHLKG+KHI  L++ +EK  A
Sbjct: 201 FNQHLKGKKHILNLHTFEEKRTA 223



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
 Frame = +3

Query: 21  CDLCQVLCSNEDALKMHYQGQKHKARLQVTETGR----DTATERPWCGLCEIWCMNEDAF 188
           C +CQV C +   LK H  GQKHK  L + ++GR    + A  R WC LC+IWC+N+ + 
Sbjct: 96  CKVCQVACPSSFHLKQHLIGQKHKDTLDL-KSGRNIREEDANTRKWCDLCKIWCINKYSL 154

Query: 189 NQHLKGQKH 215
            QH KG+KH
Sbjct: 155 EQHFKGKKH 163


>ref|XP_002284718.1| PREDICTED: uncharacterized protein LOC100250232 [Vitis vinifera]
          Length = 223

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 4/77 (5%)
 Frame = +3

Query: 21  CDLCQVLCSNEDALKMHYQGQKHKARLQ-VTET---GRDTATERPWCGLCEIWCMNEDAF 188
           C +CQV CS  ++LK H  GQKHK RLQ +T +   G + A +R WC LC+IWCMN+++F
Sbjct: 93  CKVCQVPCSGANSLKQHLLGQKHKDRLQNLTPSMGIGEEGAKQRLWCELCKIWCMNKNSF 152

Query: 189 NQHLKGQKHITRLYSMQ 239
             HLKG+KH +R  +++
Sbjct: 153 KDHLKGKKHQSRAQAVE 169



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +3

Query: 21  CDLCQVLCSNEDALKMHYQGQKHKARLQVTET----GRDTATE-RPWCGLCEIWCMNEDA 185
           C+LC++ C N+++ K H +G+KH++R Q  E     G + A +   +C +C+IWCM  DA
Sbjct: 139 CELCKIWCMNKNSFKDHLKGKKHQSRAQAVELHGTDGGEIANQMNKYCKVCKIWCM--DA 196

Query: 186 FNQHLKGQKHITRLYSMQEKEMAYE 260
           FNQHL+ ++HI  L++ + K+M  E
Sbjct: 197 FNQHLESKRHILNLHAAKGKKMVLE 221


>ref|XP_002923628.1| PREDICTED: zinc finger RNA-binding protein 2-like [Ailuropoda
           melanoleuca]
          Length = 945

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +3

Query: 21  CDLCQVLCSNEDALKMHYQGQKHKARLQVTETGRDTA------TERPWCGLCEIWCMNED 182
           CD+C++ C+     + H +GQKHK +    +TG   +        R  CGLC +WC   D
Sbjct: 252 CDICKISCAGPQTYREHLEGQKHKKKEAAQKTGTQASGGPGGVQARLCCGLCAVWCTGAD 311

Query: 183 AFNQHLKGQKH 215
           A+  H++G +H
Sbjct: 312 AYAAHIRGARH 322


>gb|EFB13563.1| hypothetical protein PANDA_012802 [Ailuropoda melanoleuca]
          Length = 759

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +3

Query: 21  CDLCQVLCSNEDALKMHYQGQKHKARLQVTETGRDTA------TERPWCGLCEIWCMNED 182
           CD+C++ C+     + H +GQKHK +    +TG   +        R  CGLC +WC   D
Sbjct: 164 CDICKISCAGPQTYREHLEGQKHKKKEAAQKTGTQASGGPGGVQARLCCGLCAVWCTGAD 223

Query: 183 AFNQHLKGQKH 215
           A+  H++G +H
Sbjct: 224 AYAAHIRGARH 234


>ref|XP_001659016.1| double-stranded RNA-binding protein zn72d [Aedes aegypti]
           gi|108875868|gb|EAT40093.1| AAEL008171-PA [Aedes
           aegypti]
          Length = 884

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
 Frame = +3

Query: 21  CDLCQVLCSNEDALKMHYQGQKHKAR----LQVTETGRDTATERP---WCGLCEIWCMNE 179
           CD+C++ C+     + H +GQKHK R     Q TE G  T    P    C LC++ C   
Sbjct: 260 CDVCKISCAGPQTYREHLEGQKHKKRELLLKQATEPGTATPARPPNSLHCELCDVTCTGN 319

Query: 180 DAFNQHLKGQKH 215
           DA+  H++G KH
Sbjct: 320 DAYAAHVRGAKH 331


Top