BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032959
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   149   2e-34
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               147   1e-33
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   145   3e-33
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   144   7e-33
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   144   7e-33

>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  149 bits (377), Expect = 2e-34
 Identities = 67/128 (52%), Positives = 91/128 (71%)
 Frame = -2

Query: 385  IALIPKVPIPSDFSQYRPIFCCNILYKCVSKILASRLKACLPEIISPNQSAFVSKRSIGD 206
            +ALIPK     +   YRPI CCN+LYK +SK+LA+RLK  LPE I+PNQSAF+S R + +
Sbjct: 780  LALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLME 839

Query: 205  NILLAQSICRNYHLSSGQPRCTIKLDISKAFDSLNWSFIENTLHAMQFPPVFIAWISKCI 26
            N+LLA  + ++YH     PRC +K+D+SKAFDS+ W F+ NTL A+  P  FI WI+ CI
Sbjct: 840  NLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCI 899

Query: 25   STCMYSIK 2
            ST  +S++
Sbjct: 900  STASFSVQ 907


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  147 bits (370), Expect = 1e-33
 Identities = 69/128 (53%), Positives = 90/128 (70%)
 Frame = -2

Query: 385 IALIPKVPIPSDFSQYRPIFCCNILYKCVSKILASRLKACLPEIISPNQSAFVSKRSIGD 206
           +ALIPK     +   YRPI CCN+LYK +SKI+A+RLK  LP  I+ NQSAFV  R + +
Sbjct: 161 LALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIE 220

Query: 205 NILLAQSICRNYHLSSGQPRCTIKLDISKAFDSLNWSFIENTLHAMQFPPVFIAWISKCI 26
           N+LLA  + ++YH  S   RC IK+DISKAFDS+ WSF+ NTL AM F P FI WI+ CI
Sbjct: 221 NLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCI 280

Query: 25  STCMYSIK 2
           +T  +S++
Sbjct: 281 TTASFSVQ 288


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  145 bits (366), Expect = 3e-33
 Identities = 68/128 (53%), Positives = 88/128 (68%)
 Frame = -2

Query: 385  IALIPKVPIPSDFSQYRPIFCCNILYKCVSKILASRLKACLPEIISPNQSAFVSKRSIGD 206
            +ALIPK     +   YRPI CCN+LYK +SKILA+RLK  LP  I  NQSAFV +R + +
Sbjct: 811  LALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLME 870

Query: 205  NILLAQSICRNYHLSSGQPRCTIKLDISKAFDSLNWSFIENTLHAMQFPPVFIAWISKCI 26
            N+LLA  + ++YH  S  PRC +K+DISKAFDS+ W F+ NTL A+ FP  F  WI  CI
Sbjct: 871  NVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCI 930

Query: 25   STCMYSIK 2
            ST  +S++
Sbjct: 931  STATFSVQ 938


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  144 bits (363), Expect = 7e-33
 Identities = 70/128 (54%), Positives = 89/128 (69%)
 Frame = -2

Query: 385 IALIPKVPIPSDFSQYRPIFCCNILYKCVSKILASRLKACLPEIISPNQSAFVSKRSIGD 206
           +ALIPK     +   YRPI CCN+LYK +SKILA+RLK  LP+ I  NQSAFV  R + +
Sbjct: 235 LALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIE 294

Query: 205 NILLAQSICRNYHLSSGQPRCTIKLDISKAFDSLNWSFIENTLHAMQFPPVFIAWISKCI 26
           N+LLA  + ++YH  S   RC +K+DISKAFDSL WSF+ + L AM FP  FI WIS C+
Sbjct: 295 NVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCM 354

Query: 25  STCMYSIK 2
           ST  +SI+
Sbjct: 355 STASFSIQ 362


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  144 bits (363), Expect = 7e-33
 Identities = 67/128 (52%), Positives = 88/128 (68%)
 Frame = -2

Query: 385 IALIPKVPIPSDFSQYRPIFCCNILYKCVSKILASRLKACLPEIISPNQSAFVSKRSIGD 206
           +ALIPK     +   YRPI CCN+LYK +SKI+A+RLK  LP+ I  NQSAFV  R + +
Sbjct: 402 LALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIE 461

Query: 205 NILLAQSICRNYHLSSGQPRCTIKLDISKAFDSLNWSFIENTLHAMQFPPVFIAWISKCI 26
           N+LLA  I ++YH  S   RC +K+DISKAFDS+ W F+ N L AM FPP F  WI+ CI
Sbjct: 462 NVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCI 521

Query: 25  STCMYSIK 2
           +T  +S++
Sbjct: 522 TTASFSVQ 529