BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032847
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    61   1e-07
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            61   1e-07
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    59   3e-07
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              57   1e-06
gb|AAF81336.1|AC007767_16 Strong similarity to a putative non-LT...    57   2e-06

>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
 Frame = +2

Query: 14  PSNHVLATELRHKLSFIEISHH------DKISWNGVSTV-----KISSIWDSIRNRTAPQ 160
           P  H   T LR +    E+ H       D + W G   +          W + R      
Sbjct: 223 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKV 282

Query: 161 NWVHHIWHSWIPKKWSFMAWLALQNRLLTCDRMVRFGLGNDTVCVLC 301
           NW   +W S    K+S +AW+A++NRL T DRM+ +  G D+ CVLC
Sbjct: 283 NWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 329


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
 Frame = +2

Query: 14  PSNHVLATELRHKLSFIEISHH------DKISWNGVSTV-----KISSIWDSIRNRTAPQ 160
           P  H   T LR +    E+ H       D + W G   +          W + R      
Sbjct: 251 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKV 310

Query: 161 NWVHHIWHSWIPKKWSFMAWLALQNRLLTCDRMVRFGLGNDTVCVLC 301
           NW   +W S    K+S +AW+A++NRL T DRM+ +  G D+ CVLC
Sbjct: 311 NWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 357


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +2

Query: 41   LRHKLSFIEISHHDKISWNGVSTV-----KISSIWDSIRNRTAPQNWVHHIWHSWIPKKW 205
            L  K     I   D I W G   V          W+ IR  +  + W   +W +    K+
Sbjct: 732  LLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKF 791

Query: 206  SFMAWLALQNRLLTCDRMVRFGLGNDTVCVLC 301
            SF AWLA++NRL T DRM+ +  G  T CV C
Sbjct: 792  SFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFC 823


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +2

Query: 80  DKISWNG-----VSTVKISSIWDSIRNRTAPQNWVHHIWHSWIPKKWSFMAWLALQNRLL 244
           D + W G     +        W+  RN + P  W   IW +    K+SF AWLA+QNRL 
Sbjct: 453 DSVLWRGRNDEYMPKFSTRDTWNQTRNTSTPVTWHMGIWFAHATPKFSFCAWLAVQNRLS 512

Query: 245 TCDRMVRFGLGNDTVCVLC 301
           T D+M+++       CVLC
Sbjct: 513 TGDKMLQWNRRLSPTCVLC 531


>gb|AAF81336.1|AC007767_16 Strong similarity to a putative non-LTR retroelement reverse
           transcriptase At2g23880 gi|3738337 from Arabidopsis
           thaliana BAC F27L4 gb|AC005170 [Arabidopsis thaliana]
          Length = 206

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +2

Query: 68  ISHHDKISWNGVS-----TVKISSIWDSIRNRTAPQNWVHHIWHSWIPKKWSFMAWLALQ 232
           I   + I W G +     T      W+ IR  +  + W   +W +    K+SF AWLA++
Sbjct: 28  IEREEAILWRGKADVFKATFSTKDTWNHIRTSSNQRAWHTGVWFAHATPKFSFCAWLAVR 87

Query: 233 NRLLTCDRMVRFGLGNDTVCVLC 301
           NRL   DRM+ +  G  T CV C
Sbjct: 88  NRLSMVDRMMTWNNGTPTTCVFC 110