BLASTX nr result

ID: Bupleurum21_contig00032792 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032792
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    71   8e-11
ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp....    66   3e-09
ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232...    60   1e-07
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...    60   2e-07

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 31/104 (29%), Positives = 48/104 (46%)
 Frame = -3

Query: 377 SIWVRWLHDSYFRSKPFWTASIPRGCCWSLRQILRARPKAMTHFRRVIGSGSNTLLWHDP 198
           SIW  W+  +  R + FWT   P+ C W+  +IL+ R  A    + +IG G  T LW D 
Sbjct: 188 SIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDN 247

Query: 197 WVTQCPLIHLFGSGIISTLESTNLATVDSILIDGAWRIPSNHVV 66
           W    PL   +G   I        A V+ ++ +  W+ P+   +
Sbjct: 248 WHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAI 291


>ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323307|gb|EFH53728.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 328

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
 Frame = -3

Query: 386 RTNSIWVRWLHDSYFRSKPFWTASIPRGCCWS--LRQILRARPKAMTHFRRVIGSGSNTL 213
           R  S+WV W+   Y  + P WT +  +   +S   R++L+ RPK +  F   IG+  +T 
Sbjct: 40  RDGSLWVAWIRSKYLFTSPLWTLN-GKNASYSRIFRKLLQLRPKVLKFFSIKIGNSDSTF 98

Query: 212 LWHDPWVTQCPLIHLFGSGIISTLESTNLATVDSILIDGAWRIPSNHVVAMELRH 48
            W DPW     L H  GS   + L  +  +TV  + I+  W +P+       L H
Sbjct: 99  FWWDPWTPFGSLYHFLGSDGPTHLGISLFSTVAELRIEDGWSLPNARSEKQVLLH 153


>ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232257, partial [Cucumis
           sativus]
          Length = 297

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
 Frame = -3

Query: 386 RTNSIWVRWLHDSYFRSKPFWTASIPRGCCWSLRQILRARPKAMTHFRRVIGSGSNTLLW 207
           ++ S+WV W+     + +  W      G  W  R+ILR +     H +  +G+G    +W
Sbjct: 113 KSGSLWVAWVESYILKGRSLWEIDAGVGRSWCFREILRKQDILKAHVKMEVGNGRKYRVW 172

Query: 206 HDPWVTQCPLIHLFGSGIISTLEST-NLATVDSILIDGAWRIPSNHVVAMEL 54
             PW+   P+I  FG  +I    S  + + VD +  D  WR P  ++  M++
Sbjct: 173 LVPWIQGGPIIQQFGERVIYDASSRWDASLVDFMGRDDDWRWPLVYLDLMDI 224


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 42/92 (45%)
 Frame = -3

Query: 341  RSKPFWTASIPRGCCWSLRQILRARPKAMTHFRRVIGSGSNTLLWHDPWVTQCPLIHLFG 162
            R + FWT   P+ C W+  +IL+ R  A    + +IG G  T LW D W    PL   +G
Sbjct: 1073 RGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYG 1132

Query: 161  SGIISTLESTNLATVDSILIDGAWRIPSNHVV 66
               I        A V+ ++ +  W+ P+   +
Sbjct: 1133 ERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAI 1164


>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 288

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = -3

Query: 377 SIWVRWLHDSYFRSKPFWTASIPRGCCWSLRQILRARPKAMTHFRRVIGSGSNTLLWHDP 198
           S+WV W+     + +  W   +  G  W  R ILR R     H +  +G+G    +W DP
Sbjct: 48  SLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDP 107

Query: 197 WVTQCPLIHLFGSGIISTLESTNLA-TVDSILIDGAWR 87
            +   P+I  FG  +I   +S   A  VD +  DG WR
Sbjct: 108 RIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWR 145


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