BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032785
         (471 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002528578.1| pentatricopeptide repeat-containing protein,...   102   4e-20
ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containi...    81   1e-13
ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arab...    78   7e-13
ref|NP_196771.1| pentatricopeptide repeat-containing protein [Ar...    69   3e-10

>ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  117 bits (292), Expect = 1e-24
 Identities = 59/147 (40%), Positives = 96/147 (65%), Gaps = 7/147 (4%)
 Frame = +3

Query: 48  KFFCSNSNSTKP-----EQIQRIQTLVSHQHRHEQINKLETHLQNNNTNMAKKMLNTFIL 212
           K FCS +   +P          +Q  V  Q RHE + KL+T LQ   T  A++++ + +L
Sbjct: 29  KPFCSLTEKQEPTSTTNNSTTNLQGQVQEQARHEHVQKLQTLLQQGRTETARRLIRSMLL 88

Query: 213 TKSTFTSPADIYSVCASPTT--KYTLLNLLLSVCAELKLPNEAMELYMLVRKDGIFPSLS 386
            KS F+SP+ +Y++ +  +T  K    ++LLS+C+E K+ +E+ ELYML++KDG+ PS++
Sbjct: 89  PKSPFSSPSHLYTLFSLSSTPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVA 148

Query: 387 AFNLLLESLVSSSQYNKTLELFSQVIE 467
           + NL LESLVS+ +Y  TL+LFS+++E
Sbjct: 149 SLNLFLESLVSTKRYEDTLQLFSEIVE 175


>ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531974|gb|EEF33786.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 817

 Score =  102 bits (253), Expect = 4e-20
 Identities = 58/147 (39%), Positives = 90/147 (61%), Gaps = 8/147 (5%)
 Frame = +3

Query: 45  YKFFCSNSNSTKPEQIQRIQTLVSH-----QHRHEQINKLETHLQNNNTNMAKKMLNTFI 209
           +  F S S    PE+ ++ Q  +S+     Q R+EQ+NKL+  LQ N    A  +  + I
Sbjct: 22  FPVFPSFSTIPTPEESEQTQNTLSNNSSKDQERYEQVNKLQILLQQNCNEAAYSLAKSLI 81

Query: 210 LTKSTFTSPADIYS---VCASPTTKYTLLNLLLSVCAELKLPNEAMELYMLVRKDGIFPS 380
           LTKSTF+SP+D++S    C+ P  + TL ++LLSVC + K+  EA+ELY  +R+DG  PS
Sbjct: 82  LTKSTFSSPSDLFSCFSACSIPL-RITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPS 140

Query: 381 LSAFNLLLESLVSSSQYNKTLELFSQV 461
           L + +LL   LV+  Q+ K ++LF ++
Sbjct: 141 LVSLSLLFSCLVNEKQFVKVVDLFMEI 167


>ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
 Frame = +3

Query: 15  LKFRISDHLH--YKFFCSNSNSTKPEQIQRIQTLVSHQHRHEQINKLETHLQNNNTNMAK 188
           L+ R + H +    FFCS S +      Q       +Q R +++ KLET +    T  A+
Sbjct: 9   LRLRPNSHFNNSISFFCSQSLTLCESDPQ-------YQKRLQKVQKLETLISRGRTITAR 61

Query: 189 KMLNTFILTKSTFTSPADIYSVCASPTTKYTLLNLLLSVCAELKLPNEAMELYMLVRKDG 368
           + L + +LTK+ F+S +++++  + P     LL L    C+  K+ +EA +LY  +RKDG
Sbjct: 62  RFLRSLLLTKTAFSSLSELHAHVSKPFFSDNLLWL----CSVSKMLDEATDLYSTMRKDG 117

Query: 369 IFPSLSAFNLLLESLVSSSQYNKTLELFSQVIE 467
             PS  + N LL +LV S  + KTL +F+ VI+
Sbjct: 118 FVPSTRSVNRLLRTLVDSRHFEKTLAVFADVID 150


>ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata] gi|297317348|gb|EFH47770.1| hypothetical protein
           ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata]
          Length = 1202

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 45/137 (32%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
 Frame = +3

Query: 69  NSTKPEQIQRIQTLVSHQHRHEQINKLETHLQNNNTNMAKKMLNTFILTKST-FTSPADI 245
           + ++P Q      +   + RHE++  L   LQ N    A+ +L + + + S  FTSP ++
Sbjct: 409 SESQPAQAPPTNPVTGDEERHEKLRNLRVLLQQNRIETARGVLYSLLRSDSAPFTSPKEL 468

Query: 246 YSV--CASPTTKYTLLNLLLSVCA-ELKLPNEAMELYMLVRKDGIFPSLSAFNLLLESLV 416
           +S    +SP+ K+    LLLSV   E K+ +EA +L+  +R +GIFPS  +  LLL+ LV
Sbjct: 469 FSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLV 528

Query: 417 SSSQYNKTLELFSQVIE 467
            + Q+  T+ +F  ++E
Sbjct: 529 KTKQFRVTINVFLNILE 545


>ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
           gi|9759377|dbj|BAB10028.1| unnamed protein product
           [Arabidopsis thaliana] gi|28973713|gb|AAO64173.1|
           unknown protein [Arabidopsis thaliana]
           gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis
           thaliana] gi|110737169|dbj|BAF00534.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332004380|gb|AED91763.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
 Frame = +3

Query: 132 EQINKLETHLQNNNTNMAKKMLNTFILTKST-FTSPADIYSV--CASPTTKYTLLNLLLS 302
           E++  L   LQ N    A+ +L++ + + ST F SP +++S    +SP+ K+    LLLS
Sbjct: 57  EKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLS 116

Query: 303 VCA-ELKLPNEAMELYMLVRKDGIFPSLSAFNLLLESLVSSSQYNKTLELFSQVIE 467
           V   E K+ +EA +L+  +R +GI+PS  +  LLL+ LV + Q+  T+ +F  ++E
Sbjct: 117 VLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 172