BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032753
         (587 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26264.3| unnamed protein product [Vitis vinifera]              242   3e-62
ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containi...   242   3e-62
ref|XP_002517126.1| pentatricopeptide repeat-containing protein,...   237   9e-61
ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containi...   212   3e-53
ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   205   5e-51

>emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  242 bits (618), Expect = 3e-62
 Identities = 119/159 (74%), Positives = 137/159 (86%)
 Frame = -2

Query: 478 MPFLTPNSLAALVESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNS 299
           MPFL+PNSLA+LVES+VSTQ + LGRAAHAQI KTL++PLP+F+ NHL+NMYSKLD PNS
Sbjct: 1   MPFLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNS 60

Query: 298 AQLVLQLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKAS 119
           AQL+L LTP  +RSVVTWT+LIAG VQNG F  AL  F NMRR+SIQPNDFTFPC FKAS
Sbjct: 61  AQLLLSLTP--NRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKAS 118

Query: 118 ASLRAPVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
            SLR+P++GKQ+HALA K+  I DVFVGCSAFDMYSK G
Sbjct: 119 GSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAG 157



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 48/146 (32%), Positives = 73/146 (50%)
 Frame = -2

Query: 439 ESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNSAQLVLQLTPTHHR 260
           ++S S +S L+G+  HA   K  +     F+     +MYSK  L   A+ +    P   R
Sbjct: 116 KASGSLRSPLVGKQVHALAVKAGQIS-DVFVGCSAFDMYSKAGLTEEARKMFDEMP--ER 172

Query: 259 SVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASASLRAPVIGKQLH 80
           ++ TW + ++  V  G + DAL  F   R+E I+P DF       A A L    +GK +H
Sbjct: 173 NIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVH 232

Query: 79  ALATKSAHIFDVFVGCSAFDMYSKTG 2
            LA K+  + ++FVG +  DMY K G
Sbjct: 233 TLAVKACVVGNIFVGSALVDMYGKCG 258


>ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  242 bits (618), Expect = 3e-62
 Identities = 119/159 (74%), Positives = 137/159 (86%)
 Frame = -2

Query: 478 MPFLTPNSLAALVESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNS 299
           MPFL+PNSLA+LVES+VSTQ + LGRAAHAQI KTL++PLP+F+ NHL+NMYSKLD PNS
Sbjct: 1   MPFLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNS 60

Query: 298 AQLVLQLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKAS 119
           AQL+L LTP  +RSVVTWT+LIAG VQNG F  AL  F NMRR+SIQPNDFTFPC FKAS
Sbjct: 61  AQLLLSLTP--NRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKAS 118

Query: 118 ASLRAPVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
            SLR+P++GKQ+HALA K+  I DVFVGCSAFDMYSK G
Sbjct: 119 GSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAG 157



 Score = 72.0 bits (175), Expect = 7e-11
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 2/154 (1%)
 Frame = -2

Query: 457 SLAALVESSVSTQSALLGRAAHAQIFKTLESPLPAFLS--NHLINMYSKLDLPNSAQLVL 284
           +  A + +        LGR  H  +   L+S   A +S  N LI+ Y K      ++++ 
Sbjct: 211 TFCAFLNACAGASYLRLGRQLHGFV---LQSGFEADVSVANGLIDFYGKCHQVGCSEIIF 267

Query: 283 QLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASASLRA 104
             +     + V+W S+I  +VQN     A + F   R+E I+P DF       A A L  
Sbjct: 268 --SGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSV 325

Query: 103 PVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
             +GK +H LA K+  + ++FVG +  DMY K G
Sbjct: 326 LEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCG 359



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 44/144 (30%), Positives = 64/144 (44%)
 Frame = -2

Query: 439 ESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNSAQLVLQLTPTHHR 260
           ++S S +S L+G+  HA   K  +     F+     +MYSK  L   A+ +    P   R
Sbjct: 116 KASGSLRSPLVGKQVHALAVKAGQIS-DVFVGCSAFDMYSKAGLTEEARKMFDEMP--ER 172

Query: 259 SVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASASLRAPVIGKQLH 80
           ++ TW + ++  V  G + DAL  F   R E  +PN  TF     A A      +G+QLH
Sbjct: 173 NIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLH 232

Query: 79  ALATKSAHIFDVFVGCSAFDMYSK 8
               +S    DV V     D Y K
Sbjct: 233 GFVLQSGFEADVSVANGLIDFYGK 256


>ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543761|gb|EEF45289.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 463

 Score =  237 bits (605), Expect = 9e-61
 Identities = 118/159 (74%), Positives = 134/159 (84%)
 Frame = -2

Query: 478 MPFLTPNSLAALVESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNS 299
           MP  TPNSLA ++ES++ST+S+ LGRA HA+I KT +SPLP FLSNHLI+MYSKLDLPNS
Sbjct: 1   MPSFTPNSLAPILESAISTRSSFLGRATHARIIKTFQSPLPPFLSNHLISMYSKLDLPNS 60

Query: 298 AQLVLQLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKAS 119
           AQLVL LTPT  RSVVTWTSLI+G VQNGHF+ AL  F NMRR++IQPNDFTFPC FKAS
Sbjct: 61  AQLVLHLTPT--RSVVTWTSLISGSVQNGHFSFALYHFFNMRRDNIQPNDFTFPCAFKAS 118

Query: 118 ASLRAPVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
           ASL  P +GKQ+HA+A K   I DVFVGCSAFDMYSKTG
Sbjct: 119 ASLLLPFVGKQIHAIAVKFGQINDVFVGCSAFDMYSKTG 157



 Score = 72.0 bits (175), Expect = 7e-11
 Identities = 45/136 (33%), Positives = 66/136 (48%)
 Frame = -2

Query: 409 LGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNSAQLVLQLTPTHHRSVVTWTSLIA 230
           LGR  H  + ++      + L N LI+ Y K      A++V       +R+ V+W S++A
Sbjct: 227 LGRQLHGFVIRSGFEKSVSVL-NGLIDFYGKCKEVRLAEMVFG--KMENRNAVSWCSMVA 283

Query: 229 GFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASASLRAPVIGKQLHALATKSAHIF 50
              QNG    A + F   R+E I+P D+       A A L    +G+  HALA K+    
Sbjct: 284 ACEQNGEEEKACLFFVEGRKEGIEPTDYMVSSVISACAGLAGLELGRSFHALAVKACLEG 343

Query: 49  DVFVGCSAFDMYSKTG 2
           D+FVG +  DMY K G
Sbjct: 344 DIFVGSALVDMYGKCG 359



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 43/144 (29%), Positives = 63/144 (43%)
 Frame = -2

Query: 439 ESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNSAQLVLQLTPTHHR 260
           ++S S     +G+  HA   K  +     F+     +MYSK  L   AQ +    P   R
Sbjct: 116 KASASLLLPFVGKQIHAIAVKFGQIN-DVFVGCSAFDMYSKTGLKQDAQKLFDELP--ER 172

Query: 259 SVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASASLRAPVIGKQLH 80
           +VVTW + I+  V  G + +A + F  +RR   +P+  TF   F A A      +G+QLH
Sbjct: 173 NVVTWNAYISNAVLYGRYQNAAVAFVELRRAGCEPDSTTFCVFFNACADQLYVDLGRQLH 232

Query: 79  ALATKSAHIFDVFVGCSAFDMYSK 8
               +S     V V     D Y K
Sbjct: 233 GFVIRSGFEKSVSVLNGLIDFYGK 256


>ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  212 bits (540), Expect = 3e-53
 Identities = 106/154 (68%), Positives = 123/154 (79%)
 Frame = -2

Query: 463 PNSLAALVESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNSAQLVL 284
           PN L + +ES+V ++S+LLGRA HA I +T ++PLP+FL NHL+NMYSKLDLPNSAQLVL
Sbjct: 7   PNLLGSFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVL 66

Query: 283 QLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASASLRA 104
            LT  + R+VVTWTSLI+G V N  F  AL+ F NMRRE + PNDFTFPC FKASASL  
Sbjct: 67  SLT--NPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHM 124

Query: 103 PVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
           PV GKQLHALA K  +I DVFVGCSAFDMYSKTG
Sbjct: 125 PVTGKQLHALALKGGNILDVFVGCSAFDMYSKTG 158



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
 Frame = -2

Query: 463 PNSLA--ALVESSVSTQSALLGRAAHAQIFKT-LESPLPAFLSNHLINMYSKLDLPNSAQ 293
           PN++   A + +     S  LGR  H  I ++     +  F  N LI+ Y K     S++
Sbjct: 208 PNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVF--NGLIDFYGKCGDIVSSE 265

Query: 292 LVLQLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASAS 113
           LV     +  R+VV+W SL+A  VQN     A + F   R+E ++P DF       A A 
Sbjct: 266 LVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSACAE 324

Query: 112 LRAPVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
           L    +G+ +HALA K+    ++FVG +  D+Y K G
Sbjct: 325 LGGLELGRSVHALALKACVEENIFVGSALVDLYGKCG 361



 Score = 62.0 bits (149), Expect = 7e-08
 Identities = 43/146 (29%), Positives = 66/146 (45%)
 Frame = -2

Query: 439 ESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNSAQLVLQLTPTHHR 260
           ++S S    + G+  HA   K   + L  F+     +MYSK  L   A+ +    P  HR
Sbjct: 117 KASASLHMPVTGKQLHALALKG-GNILDVFVGCSAFDMYSKTGLRPEARNMFDEMP--HR 173

Query: 259 SVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKASASLRAPVIGKQLH 80
           ++ TW + ++  VQ+G   DA+  F        +PN  TF     A A + +  +G+QLH
Sbjct: 174 NLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLH 233

Query: 79  ALATKSAHIFDVFVGCSAFDMYSKTG 2
               +S +  DV V     D Y K G
Sbjct: 234 GFIVRSRYREDVSVFNGLIDFYGKCG 259


>ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  205 bits (521), Expect = 5e-51
 Identities = 104/159 (65%), Positives = 123/159 (77%)
 Frame = -2

Query: 478 MPFLTPNSLAALVESSVSTQSALLGRAAHAQIFKTLESPLPAFLSNHLINMYSKLDLPNS 299
           MPFL+ NSLA++VE +VS +S+LLGRAAHAQI KTL++P PAFL NHL+NMY+KLD  NS
Sbjct: 1   MPFLSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNS 60

Query: 298 AQLVLQLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRRESIQPNDFTFPCTFKAS 119
           A+L+L+L P   RSVVTWT+LIAG VQNG F  AL+ F +M  + ++PNDFTFPC  KAS
Sbjct: 61  AKLILELAPC--RSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKAS 118

Query: 118 ASLRAPVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
             LR    GKQLHALA K   I DVFVGCS FDMYSK G
Sbjct: 119 TGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLG 157



 Score = 65.5 bits (158), Expect = 6e-09
 Identities = 40/116 (34%), Positives = 57/116 (49%)
 Frame = -2

Query: 349 LSNHLINMYSKLDLPNSAQLVLQLTPTHHRSVVTWTSLIAGFVQNGHFADALIQFCNMRR 170
           +SN LI+ Y K      +++V        R+ V+W+SLIA +VQN     A   F   R+
Sbjct: 246 VSNGLIDFYGKCGEVECSEMVFDRMG--ERNSVSWSSLIAAYVQNNEEEKASCLFLRARK 303

Query: 169 ESIQPNDFTFPCTFKASASLRAPVIGKQLHALATKSAHIFDVFVGCSAFDMYSKTG 2
           E I+P DF       A A L     G+ + ALA K+    ++FV  +  DMY K G
Sbjct: 304 EDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCG 359