BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032707
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY99339.1| pol-polyprotein [Silene latifolia]                      98   8e-19
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...    95   5e-18
gb|AAL75983.1|AF466203_12 putative gag-pol precursor -orf2 [Zea ...    94   2e-17
gb|AEJ07907.1| putative Huck2 pol protein [Zea luxurians]              94   2e-17
emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]                   92   3e-17

>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 47/124 (37%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3    PVEVGSPSFRSVYFNEQNNQLGIRTNLDLLDEVRDKAVQHMKDYKRKTVDYFSKKINPRQ 182
            P+E   P+FR+  FN   N+ G++ +LDL++E RD A  ++  Y+ +    ++ +++ R 
Sbjct: 1182 PIEAVVPTFRTATFNPVENEEGLKASLDLVEESRDTARLNLAVYQNRMRRAYNHRVHKRD 1241

Query: 183  YSEGDLVLRATEASDPTN-QGKLSPNWEGPYQIVKVVRPGTYLLATMNGQEIANTWHGLR 359
               GDLVLR + A++  N  GK++ NWEGPY++V+ +RPGTY L  M G  + + W+   
Sbjct: 1242 LRVGDLVLRKSTATNKGNIHGKMTTNWEGPYKVVEEMRPGTYRLTDMEGVPLMSHWNTDN 1301

Query: 360  LRKF 371
            LRK+
Sbjct: 1302 LRKY 1305


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
 Frame = +3

Query: 3    PVEVGSPSFR-SVYFNEQN-NQLGIRTNLDLLDEVRDKAVQHMKDYKRKTVDYFSKKINP 176
            P E G P+ R S+  N+   N   +  NLD L+E RD+A+  +++Y++    +++KK+  
Sbjct: 1660 PCEAGLPTVRRSMLINDPTLNDQMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKN 1719

Query: 177  RQYSEGDLVLRAT-EASDPTNQGKLSPNWEGPYQIVKVVRPGTYLLATMNGQEIANTWHG 353
            R ++EGDLVLR   E +   + GKL  +WEGPY I KVV+PG Y L TM+G  I  +W+ 
Sbjct: 1720 RLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNS 1779

Query: 354  LRLRKF 371
              L+++
Sbjct: 1780 ANLKRY 1785


>gb|AAL75983.1|AF466203_12 putative gag-pol precursor -orf2 [Zea mays]
          Length = 1007

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 49/122 (40%), Positives = 73/122 (59%)
 Frame = +3

Query: 6    VEVGSPSFRSVYFNEQNNQLGIRTNLDLLDEVRDKAVQHMKDYKRKTVDYFSKKINPRQY 185
            +E GSP  R+  + EQ+NQ     +LD L+E RD+A+ H   Y++    Y ++ +  R+ 
Sbjct: 888  LEYGSPRARA--YTEQSNQASREESLDQLEEARDRALLHSARYQQSLRRYHARGVQSREL 945

Query: 186  SEGDLVLRATEASDPTNQGKLSPNWEGPYQIVKVVRPGTYLLATMNGQEIANTWHGLRLR 365
              GDLVLR  +  D   + KL+P WEGP+ I KV++PGTY LA   G+   N W+  +LR
Sbjct: 946  QVGDLVLRLRQ--DARGRHKLTPPWEGPFVITKVLKPGTYKLANNQGEIYGNAWNIKQLR 1003

Query: 366  KF 371
            +F
Sbjct: 1004 RF 1005


>gb|AEJ07907.1| putative Huck2 pol protein [Zea luxurians]
          Length = 619

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 48/122 (39%), Positives = 74/122 (60%)
 Frame = +3

Query: 6   VEVGSPSFRSVYFNEQNNQLGIRTNLDLLDEVRDKAVQHMKDYKRKTVDYFSKKINPRQY 185
           +E GSP  R+  +++Q+NQ     +LD L+E RD+A+ +   Y++    Y ++ + PR  
Sbjct: 500 LEYGSPRTRA--YDDQSNQASREDSLDQLEEARDRALLYSARYQQSLRRYHARGVRPRDL 557

Query: 186 SEGDLVLRATEASDPTNQGKLSPNWEGPYQIVKVVRPGTYLLATMNGQEIANTWHGLRLR 365
             GDLVLR  +  D   + KL+P WEGP+ I KV++PGTY LA   G+   N W+  +LR
Sbjct: 558 QVGDLVLRLRQ--DARGRHKLTPPWEGPFVIAKVLKPGTYKLANSQGEVYGNAWNIQQLR 615

Query: 366 KF 371
           +F
Sbjct: 616 RF 617


>emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
          Length = 2097

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 49/123 (39%), Positives = 77/123 (62%)
 Frame = +3

Query: 3    PVEVGSPSFRSVYFNEQNNQLGIRTNLDLLDEVRDKAVQHMKDYKRKTVDYFSKKINPRQ 182
            P E+   S R+ +F+E +       ++D L+E R++A+     Y++    Y S+K+ PR 
Sbjct: 1975 PPELKIGSARTDHFDETDQNERRLDDVDFLEERRNQALVRSAVYQQAMRRYHSRKVQPRS 2034

Query: 183  YSEGDLVLRATEASDPTNQGKLSPNWEGPYQIVKVVRPGTYLLATMNGQEIANTWHGLRL 362
             + GDLVLR  ++   TN+ KLSP WEGPY +V+V RPG+  LA  +GQ ++N+W+  +L
Sbjct: 2035 LAVGDLVLRKIQSQ--TNRNKLSPKWEGPYTVVEVTRPGSVRLAMSDGQILSNSWNIDQL 2092

Query: 363  RKF 371
            RKF
Sbjct: 2093 RKF 2095