BLASTX nr result

ID: Bupleurum21_contig00032583 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032583
         (667 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28040.3| unnamed protein product [Vitis vinifera]              215   5e-54
emb|CAN83797.1| hypothetical protein VITISV_002973 [Vitis vinifera]   215   5e-54
ref|XP_002514271.1| F-box and wd40 domain protein, putative [Ric...   198   7e-49
ref|XP_004155724.1| PREDICTED: LOW QUALITY PROTEIN: putative E3 ...   196   4e-48
ref|XP_004142566.1| PREDICTED: putative E3 ubiquitin-protein lig...   196   4e-48

>emb|CBI28040.3| unnamed protein product [Vitis vinifera]
          Length = 1154

 Score =  215 bits (548), Expect = 5e-54
 Identities = 99/146 (67%), Positives = 125/146 (85%)
 Frame = -1

Query: 667  LFCGCHDNSIQEVDLATGTLNTIQIGSRHFMTKANPISALQVHNGLIYSASSPIDGAAVK 488
            L+CGCHDNSIQE+DLATGTL++IQ G+R  + K+NP+ ALQVH+G+IYS+S  +DGAAVK
Sbjct: 1008 LYCGCHDNSIQEIDLATGTLSSIQSGTRKLLGKSNPVHALQVHDGMIYSSSFSLDGAAVK 1067

Query: 487  IWSALNYNIAGSVPSTLEVRSMVISSDIIYLGCKGGVVEVWCRKKYDKKETLQTGTNGKV 308
            IWSA NY++ GS+ ST+EVR++ +SS++IYLG K G VE+WCRKK  + ETLQTGTNGKV
Sbjct: 1068 IWSATNYSMVGSLASTMEVRTLAVSSELIYLGSKSGTVEIWCRKKLIRVETLQTGTNGKV 1127

Query: 307  LCMALDSDEEVLVIGTSNGIIQAWGL 230
             CMA+D DEEVLV+GTS+G IQAW L
Sbjct: 1128 QCMAVDGDEEVLVVGTSDGRIQAWEL 1153


>emb|CAN83797.1| hypothetical protein VITISV_002973 [Vitis vinifera]
          Length = 1618

 Score =  215 bits (548), Expect = 5e-54
 Identities = 99/146 (67%), Positives = 125/146 (85%)
 Frame = -1

Query: 667  LFCGCHDNSIQEVDLATGTLNTIQIGSRHFMTKANPISALQVHNGLIYSASSPIDGAAVK 488
            L+CGCHDNSIQE+DLATGTL++IQ G+R  + K+NP+ ALQVH+G+IYS+S  +DGAAVK
Sbjct: 1472 LYCGCHDNSIQEIDLATGTLSSIQSGTRKLLGKSNPVHALQVHDGMIYSSSFSLDGAAVK 1531

Query: 487  IWSALNYNIAGSVPSTLEVRSMVISSDIIYLGCKGGVVEVWCRKKYDKKETLQTGTNGKV 308
            IWSA NY++ GS+ ST+EVR++ +SS++IYLG K G VE+WCRKK  + ETLQTGTNGKV
Sbjct: 1532 IWSATNYSMVGSLASTMEVRTLAVSSELIYLGSKSGTVEIWCRKKLIRVETLQTGTNGKV 1591

Query: 307  LCMALDSDEEVLVIGTSNGIIQAWGL 230
             CMA+D DEEVLV+GTS+G IQAW L
Sbjct: 1592 QCMAVDGDEEVLVVGTSDGRIQAWEL 1617


>ref|XP_002514271.1| F-box and wd40 domain protein, putative [Ricinus communis]
            gi|223546727|gb|EEF48225.1| F-box and wd40 domain
            protein, putative [Ricinus communis]
          Length = 1268

 Score =  198 bits (504), Expect = 7e-49
 Identities = 100/143 (69%), Positives = 121/143 (84%), Gaps = 1/143 (0%)
 Frame = -1

Query: 667  LFCGCHDNSIQEVDLATGTLNTIQIGSRHFMTKANPISALQVHNGLIYSASSPIDGAAVK 488
            L+CGCHD+SIQE+DLATGTL TIQ GSR  + KANPI ALQV NGLIY+ASS +DGAAVK
Sbjct: 1110 LYCGCHDSSIQEIDLATGTLVTIQHGSRKLLGKANPIHALQVGNGLIYAASSALDGAAVK 1169

Query: 487  IWSALNYNIAGSVPSTLEVRSMVISSDIIYLGCKGGVVEVWCRKKYDKKETLQTGTNG-K 311
            IW+A NY  AGS+P+TLEVR++ +SS++IYLG KGG VE+W +KK    ETLQTGT G +
Sbjct: 1170 IWNASNYGPAGSLPTTLEVRAIAVSSELIYLGSKGGNVEIWDQKKLSIIETLQTGTEGAR 1229

Query: 310  VLCMALDSDEEVLVIGTSNGIIQ 242
            +LCMALDS+EE+LVIGTS+G IQ
Sbjct: 1230 ILCMALDSNEEMLVIGTSDGRIQ 1252


>ref|XP_004155724.1| PREDICTED: LOW QUALITY PROTEIN: putative E3 ubiquitin-protein ligase
            LIN-2-like [Cucumis sativus]
          Length = 1230

 Score =  196 bits (497), Expect = 4e-48
 Identities = 94/146 (64%), Positives = 119/146 (81%)
 Frame = -1

Query: 667  LFCGCHDNSIQEVDLATGTLNTIQIGSRHFMTKANPISALQVHNGLIYSASSPIDGAAVK 488
            LFCGCHD+SIQEVDLATGTL+ I  GSR  + KANPI ALQV++  ++SAS+ +DGAAVK
Sbjct: 1085 LFCGCHDSSIQEVDLATGTLSYIHSGSRKLLGKANPIQALQVYDEQLFSASTALDGAAVK 1144

Query: 487  IWSALNYNIAGSVPSTLEVRSMVISSDIIYLGCKGGVVEVWCRKKYDKKETLQTGTNGKV 308
            IWS  NY + GS+ ++L+VRSM +SSD+ YLG KGG+VE+W R+K++K +TLQ G N K+
Sbjct: 1145 IWSTSNYGMIGSLTTSLDVRSMAVSSDLTYLGGKGGMVEIWSREKHNKIDTLQMGRNCKI 1204

Query: 307  LCMALDSDEEVLVIGTSNGIIQAWGL 230
            +CMALD  EEVLVIGTS+G IQ WGL
Sbjct: 1205 VCMALDEREEVLVIGTSDGRIQGWGL 1230


>ref|XP_004142566.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Cucumis
            sativus]
          Length = 1336

 Score =  196 bits (497), Expect = 4e-48
 Identities = 94/146 (64%), Positives = 119/146 (81%)
 Frame = -1

Query: 667  LFCGCHDNSIQEVDLATGTLNTIQIGSRHFMTKANPISALQVHNGLIYSASSPIDGAAVK 488
            LFCGCHD+SIQEVDLATGTL+ I  GSR  + KANPI ALQV++  ++SAS+ +DGAAVK
Sbjct: 1191 LFCGCHDSSIQEVDLATGTLSYIHSGSRKLLGKANPIQALQVYDEQLFSASTALDGAAVK 1250

Query: 487  IWSALNYNIAGSVPSTLEVRSMVISSDIIYLGCKGGVVEVWCRKKYDKKETLQTGTNGKV 308
            IWS  NY + GS+ ++L+VRSM +SSD+ YLG KGG+VE+W R+K++K +TLQ G N K+
Sbjct: 1251 IWSTSNYGMIGSLTTSLDVRSMAVSSDLTYLGGKGGMVEIWSREKHNKIDTLQMGRNCKI 1310

Query: 307  LCMALDSDEEVLVIGTSNGIIQAWGL 230
            +CMALD  EEVLVIGTS+G IQ WGL
Sbjct: 1311 VCMALDEREEVLVIGTSDGRIQGWGL 1336


Top