BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032490
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    91   1e-16
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    88   6e-16
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    87   1e-15
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    83   2e-14
gb|AAC24057.1| Contains similarity to reverse transcriptase-like...    82   4e-14

>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 45/105 (42%), Positives = 68/105 (64%)
 Frame = +1

Query: 1    FALYSGLKLNPKKSSCFFANVSLKTIQQTLRRCNFAWSSLPVKFLGLSLLSHSPSEKECQ 180
            FA +SGL ++ +KS+ F A++S +T    L R  F   SLPV++LGL L++   +  +C 
Sbjct: 983  FAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCL 1042

Query: 181  P*IDRICARIQSWTTRYLSFAGRVQLLESVLMSMQSFWAMFLFLP 315
            P +++I +RI SW  R+LS+AGR+QLL SV+ S+  FW     LP
Sbjct: 1043 PLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLP 1087


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 46/105 (43%), Positives = 68/105 (64%)
 Frame = +1

Query: 1    FALYSGLKLNPKKSSCFFANVSLKTIQQTLRRCNFAWSSLPVKFLGLSLLSHSPSEKECQ 180
            FA  S LK++ +KS+ F A +S       L++  F   +LPVK+LGL LL+   ++ +  
Sbjct: 875  FAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYL 934

Query: 181  P*IDRICARIQSWTTRYLSFAGRVQLLESVLMSMQSFWAMFLFLP 315
            P +++I ARI SWT R+LSFAGR+QL++SVL S+ +FW     LP
Sbjct: 935  PLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLP 979


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 41/105 (39%), Positives = 69/105 (65%)
 Frame = +1

Query: 1   FALYSGLKLNPKKSSCFFANVSLKTIQQTLRRCNFAWSSLPVKFLGLSLLSHSPSEKECQ 180
           FA +SGLK++ +KS+ + A V     Q+ +++ +F    LPV++LGL L+S   +  +C 
Sbjct: 616 FAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCL 675

Query: 181 P*IDRICARIQSWTTRYLSFAGRVQLLESVLMSMQSFWAMFLFLP 315
           P I+++  +I++WT+R+LSFAGR+ L+ S L S+ +FW     LP
Sbjct: 676 PLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLP 720


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/105 (39%), Positives = 67/105 (63%)
 Frame = +1

Query: 1    FALYSGLKLNPKKSSCFFANVSLKTIQQTLRRCNFAWSSLPVKFLGLSLLSHSPSEKECQ 180
            FA +SGL+++ +KS+ + A +S     +   R  F+   LPV++LGL L++   S  +C 
Sbjct: 728  FAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCL 787

Query: 181  P*IDRICARIQSWTTRYLSFAGRVQLLESVLMSMQSFWAMFLFLP 315
            P ++++  RI SWT+R+LS+AGR+ L+ SVL S+ +FW     LP
Sbjct: 788  PLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLP 832


>gb|AAC24057.1| Contains similarity to reverse transcriptase-like protein
           gb|2244803 from A. thaliana chromosome 4 contig
           gb|Z97336 [Arabidopsis thaliana]
          Length = 404

 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 44/105 (41%), Positives = 65/105 (61%)
 Frame = +1

Query: 1   FALYSGLKLNPKKSSCFFANVSLKTIQQTLRRCNFAWSSLPVKFLGLSLLSHSPSEKECQ 180
           FAL+SGL+++ +KS+ F A  S    Q       F+  +LPV++LGL L++   S  +  
Sbjct: 21  FALWSGLRISMEKSTLFLAGTSATAHQTITSTYPFSVGTLPVRYLGLPLVNKRLSAADYL 80

Query: 181 P*IDRICARIQSWTTRYLSFAGRVQLLESVLMSMQSFWAMFLFLP 315
           P +++I  RI SWT R+LSFAGR+ L+ SVL S+ +FW     LP
Sbjct: 81  PLLEKIRQRIGSWTARFLSFAGRLNLISSVLWSICNFWMAAFRLP 125