BLASTX nr result
ID: Bupleurum21_contig00032458
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00032458
(413 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002533891.1| pentatricopeptide repeat-containing protein,... 73 2e-11
emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera] 63 3e-09
ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containi... 63 3e-09
emb|CBI15896.3| unnamed protein product [Vitis vinifera] 63 3e-09
ref|NP_187518.1| pentatricopeptide repeat-containing protein [Ar... 60 1e-07
>ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526155|gb|EEF28491.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 701
Score = 73.2 bits (178), Expect = 2e-11
Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 44/167 (26%)
Frame = +3
Query: 21 VKLSCFQSHLEQWVLRLILIKHWESWIMDWMWSEGLSPDVFSYGTLI----KIGKLAGAG 188
+K+SC + +E+ + ++DWMWS+ L PDVFSYGTLI K+G L GA
Sbjct: 158 IKISCKKQQIEKAIS-----------LLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGAL 206
Query: 189 KMFDEMSKRIFDGNDVCFSICC--------FS*SYRKW---------------------- 278
K+FDEMS R + C+++ + W
Sbjct: 207 KVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMING 266
Query: 279 LCVRGKYNE----------NDWEFDLFTYSSLIHGQCRQCGMIERVV 389
LC G+++E N+ E D+FTYSSLIHG C + G I+ V
Sbjct: 267 LCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLC-EAGNIDGAV 312
>emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 62.8 bits (151), Expect(2) = 3e-09
Identities = 52/160 (32%), Positives = 70/160 (43%), Gaps = 55/160 (34%)
Frame = +3
Query: 99 IMDWMWSEGLSPDVFSYGTLI----KIGKLAGAGKMFDEMSKRIFDGNDVCFSICCFS*S 266
+++WMW +G SPDVFSYGTLI K G ++ A K+FDEM +R + C++I
Sbjct: 146 LLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNI-LIDGF 204
Query: 267 YRK---------W----------------------LCVRGKYNE----------NDWEFD 323
++K W LC GK++E N+ D
Sbjct: 205 FKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQD 264
Query: 324 LFTYSSLIHGQCRQCG----------MIERVVYPDSVVCN 413
L+TYS+LIHG C M E V PD VV N
Sbjct: 265 LYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYN 304
Score = 23.1 bits (48), Expect(2) = 3e-09
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 2 VNSN*WSEAELFSKSFGAMGV 64
+ SN W EAE F F MG+
Sbjct: 100 IESNKWDEAESFFLYFETMGL 120
>ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 62.8 bits (151), Expect(2) = 3e-09
Identities = 52/160 (32%), Positives = 70/160 (43%), Gaps = 55/160 (34%)
Frame = +3
Query: 99 IMDWMWSEGLSPDVFSYGTLI----KIGKLAGAGKMFDEMSKRIFDGNDVCFSICCFS*S 266
+++WMW +G SPDVFSYGTLI K G ++ A K+FDEM +R + C++I
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNI-LIDGF 229
Query: 267 YRK---------W----------------------LCVRGKYNE----------NDWEFD 323
++K W LC GK++E N+ D
Sbjct: 230 FKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQD 289
Query: 324 LFTYSSLIHGQCRQCG----------MIERVVYPDSVVCN 413
L+TYS+LIHG C M E V PD VV N
Sbjct: 290 LYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYN 329
Score = 23.1 bits (48), Expect(2) = 3e-09
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 2 VNSN*WSEAELFSKSFGAMGV 64
+ SN W EAE F F MG+
Sbjct: 125 IESNKWDEAESFFLYFETMGL 145
>emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 62.8 bits (151), Expect(2) = 3e-09
Identities = 52/160 (32%), Positives = 70/160 (43%), Gaps = 55/160 (34%)
Frame = +3
Query: 99 IMDWMWSEGLSPDVFSYGTLI----KIGKLAGAGKMFDEMSKRIFDGNDVCFSICCFS*S 266
+++WMW +G SPDVFSYGTLI K G ++ A K+FDEM +R + C++I
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNI-LIDGF 229
Query: 267 YRK---------W----------------------LCVRGKYNE----------NDWEFD 323
++K W LC GK++E N+ D
Sbjct: 230 FKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQD 289
Query: 324 LFTYSSLIHGQCRQCG----------MIERVVYPDSVVCN 413
L+TYS+LIHG C M E V PD VV N
Sbjct: 290 LYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYN 329
Score = 23.1 bits (48), Expect(2) = 3e-09
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 2 VNSN*WSEAELFSKSFGAMGV 64
+ SN W EAE F F MG+
Sbjct: 125 IESNKWDEAESFFLYFETMGL 145
>ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g09060 gi|5923671|gb|AAD56322.1|AC009326_9
hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 60.5 bits (145), Expect = 1e-07
Identities = 47/157 (29%), Positives = 64/157 (40%), Gaps = 44/157 (28%)
Frame = +3
Query: 21 VKLSCFQSHLEQWVLRLILIKHWESWIMDWMWSEGLSPDVFSYGTLI----KIGKLAGAG 188
+K+SC + E+ +DWMW EG PDVFSY T+I K GKL A
Sbjct: 156 IKMSCKKKEFEK-----------ARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDAL 204
Query: 189 KMFDEMSKRIFDGNDVCFSICCFS*SYRK--------W---------------------- 278
++FDEMS+R + C++I K W
Sbjct: 205 ELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISG 264
Query: 279 ----------LCVRGKYNENDWEFDLFTYSSLIHGQC 359
L + + +N+ E DL+TYSSLIHG C
Sbjct: 265 LSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLC 301