BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032434
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABM55238.1| integrase [Beta vulgaris]                               92   3e-17
gb|ABH08430.1| putative integrase [Beta vulgaris]                      92   3e-17
emb|CAD40731.2| OSJNBa0072D21.17 [Oryza sativa Japonica Group] g...    85   5e-15
gb|AAL31661.1|AC079179_16 Putative copia-type pol polyprotein [O...    84   9e-15
gb|ABA96551.1| retrotransposon protein, putative, Ty1-copia subc...    84   1e-14

>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
 Frame = +3

Query: 9   VQGLKHNLISISQLGDKGFETTFNKFGAKIYSLSGERV-LSGSRKGNIYVADLSSASSEV 185
           V+GLKHNL+SISQ  DKG    F+K    I ++  ++V L G+RKGN Y+ DL       
Sbjct: 616 VEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQIN 675

Query: 186 CLVTKGCEDDCNLWHKRLSHLNLNSIKKLVRKDLVIGLPSMNFEQNSLC 332
                  EDD  LWHKRL H + + ++KL  KDLV+GLPS+ F  + +C
Sbjct: 676 LTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVC 724


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
 Frame = +3

Query: 9   VQGLKHNLISISQLGDKGFETTFNKFGAKIYSLSGERV-LSGSRKGNIYVADLSSASSEV 185
           V+GLKHNL+SISQ  DKG    F+K    I ++  ++V L G+RKGN Y+ DL       
Sbjct: 616 VEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQIN 675

Query: 186 CLVTKGCEDDCNLWHKRLSHLNLNSIKKLVRKDLVIGLPSMNFEQNSLC 332
                  EDD  LWHKRL H + + ++KL  KDLV+GLPS+ F  + +C
Sbjct: 676 LTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVC 724


>emb|CAD40731.2| OSJNBa0072D21.17 [Oryza sativa Japonica Group]
           gi|38347465|emb|CAE05285.2| OSJNBa0084N21.3 [Oryza
           sativa Japonica Group]
          Length = 1452

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
 Frame = +3

Query: 3   AFVQGLKHNLISISQLGDKGFETTFNKFGAKIYSLSGERVLSGSRKGNIYVADLSSASSE 182
           A V+ LK+NL+S+SQ+ D+ FE  F K G+K++   G+ VL+ SR G ++ AD  +  S 
Sbjct: 513 ALVEDLKYNLLSVSQIVDENFEVHFKKTGSKVFDSCGDSVLNISRYGRVFKADFENPVSP 572

Query: 183 V--CLVTKGCEDDCNLWHKRLSHLNLNSIKKLVRKDLVIGLPSMNFEQNSLCS 335
           V  CLV K  + D   WH+RL H+  + + +L   DLV GLP +  + + +C+
Sbjct: 573 VITCLVAK-FDKDVMFWHRRLGHVGFDHLTRLSGLDLVCGLPKLKKDLDLVCT 624


>gb|AAL31661.1|AC079179_16 Putative copia-type pol polyprotein [Oryza sativa]
           gi|20042887|gb|AAM08715.1|AC116601_8 Putative copia-type
           pol polyprotein [Oryza sativa Japonica Group]
           gi|31429920|gb|AAP51904.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 998

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
 Frame = +3

Query: 3   AFVQGLKHNLISISQLGDKGFETTFNKFGAKIYSLSGERVLSGSRKGNIYVADLSSASSE 182
           A V+ LK+NL+S+SQ+ D+ FE  F K G+K++   G+ VL+ SR G ++ AD  +  S 
Sbjct: 567 ALVEDLKYNLLSVSQIVDENFEVHFKKTGSKVFDSCGDSVLNISRYGRVFKADFENPVSP 626

Query: 183 V--CLVTKGCEDDCNLWHKRLSHLNLNSIKKLVRKDLVIGLPSMNFEQNSLCS 335
           V  CLV K  + D   WH+RL H+  + + +L   DLV GLP +  + + +C+
Sbjct: 627 VITCLVAK-FDKDVMFWHRRLGHVGFDHLTRLSGLDLVRGLPKLKKDLDLVCA 678


>gb|ABA96551.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1487

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
 Frame = +3

Query: 3   AFVQGLKHNLISISQLGDKGFETTFNKFGAKIYSLSGERVLSGSRKGNIYVADLSSASSE 182
           A V+ LK+NL+S+SQ+ D+ FE  F K G+K++   G+ VL+ SR G ++ AD  +  S 
Sbjct: 582 ALVEDLKYNLLSVSQIVDEDFEVHFKKTGSKVFDSCGDSVLNISRYGRVFKADFDNPVSP 641

Query: 183 V--CLVTKGCEDDCNLWHKRLSHLNLNSIKKLVRKDLVIGLPSMNFEQNSLCS 335
           V  CLV K  + D   WH+RL H+  + + +L   DLV GLP +  + + +C+
Sbjct: 642 VITCLVAK-FDKDVMFWHRRLGHVGFDYLTRLSSLDLVRGLPKLKKDLDLVCT 693