BLASTX nr result

ID: Bupleurum21_contig00032382 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032382
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]   130   1e-28
emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsi...   127   9e-28
emb|CAN70438.1| hypothetical protein VITISV_011899 [Vitis vinifera]   125   4e-27
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...   124   6e-27
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380...   124   6e-27

>emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]
          Length = 1461

 Score =  130 bits (326), Expect = 1e-28
 Identities = 60/100 (60%), Positives = 77/100 (77%)
 Frame = -2

Query: 318  VSQKKYTLDLLKEHGLLNCKPLALPMDSHLKLTPTIGDQLPNPTLYQRLLGQLIYLTVTR 139
            +SQ+KYTLD+L E GLL  KPL+ PM+ + KL PT+GD L NP+ Y+RL+GQLIYLT+TR
Sbjct: 1194 ISQRKYTLDILDEAGLLGAKPLSTPMEENNKLLPTVGDLLKNPSTYRRLVGQLIYLTITR 1253

Query: 138  PDISFTVHTLSQYMNAPTTVHLQAAKRLLRYLAGSPSQGI 19
            P+IS++VH LSQ+M  P   HL A   LLRYL G+P QG+
Sbjct: 1254 PEISYSVHILSQFMQEPRKPHLHAVHHLLRYLKGAPGQGL 1293


>emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
            gi|7267797|emb|CAB81200.1| putative retrotransposon
            polyprotein [Arabidopsis thaliana]
          Length = 1203

 Score =  127 bits (319), Expect = 9e-28
 Identities = 57/106 (53%), Positives = 83/106 (78%)
 Frame = -2

Query: 318  VSQKKYTLDLLKEHGLLNCKPLALPMDSHLKLTPTIGDQLPNPTLYQRLLGQLIYLTVTR 139
            V Q+KY  +LL++ GL  CKP ++PMD +L LT  +G  LPN T Y+ L+G+L+YL +TR
Sbjct: 772  VCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITR 831

Query: 138  PDISFTVHTLSQYMNAPTTVHLQAAKRLLRYLAGSPSQGILLASSS 1
            PDI+F VHTLSQ+++APT +H+QAA ++LRYL G+P QG++ ++SS
Sbjct: 832  PDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASS 877


>emb|CAN70438.1| hypothetical protein VITISV_011899 [Vitis vinifera]
          Length = 314

 Score =  125 bits (314), Expect = 4e-27
 Identities = 58/100 (58%), Positives = 75/100 (75%)
 Frame = -2

Query: 318 VSQKKYTLDLLKEHGLLNCKPLALPMDSHLKLTPTIGDQLPNPTLYQRLLGQLIYLTVTR 139
           +SQ+KYTLD+L E GLL  KPL+ PM+ + KL PT+GD L NP+ Y+RL+ QLIYLT+TR
Sbjct: 47  ISQRKYTLDILDEAGLLGAKPLSTPMEENNKLLPTVGDLLKNPSTYRRLVEQLIYLTITR 106

Query: 138 PDISFTVHTLSQYMNAPTTVHLQAAKRLLRYLAGSPSQGI 19
           P+IS++VH LSQ+M  P   HL     LLRYL G+P QG+
Sbjct: 107 PEISYSVHILSQFMQEPRKPHLDVVHHLLRYLKGAPGQGL 146


>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score =  124 bits (312), Expect = 6e-27
 Identities = 60/108 (55%), Positives = 77/108 (71%)
 Frame = -2

Query: 324  FFVSQKKYTLDLLKEHGLLNCKPLALPMDSHLKLTPTIGDQLPNPTLYQRLLGQLIYLTV 145
            F +SQ+KY LD++KE GLL CKP A+P+  + KL    G    NP  Y+RL+G+ IYLT+
Sbjct: 1227 FCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTI 1286

Query: 144  TRPDISFTVHTLSQYMNAPTTVHLQAAKRLLRYLAGSPSQGILLASSS 1
            TRPD+S+ VH LSQ+M AP   H +AA RL+RYL GSP+QGI L S S
Sbjct: 1287 TRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDS 1334


>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
           At2g23330 [Arabidopsis thaliana]
           gi|110742535|dbj|BAE99183.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 776

 Score =  124 bits (312), Expect = 6e-27
 Identities = 60/108 (55%), Positives = 77/108 (71%)
 Frame = -2

Query: 324 FFVSQKKYTLDLLKEHGLLNCKPLALPMDSHLKLTPTIGDQLPNPTLYQRLLGQLIYLTV 145
           F +SQ+KY LD++KE GLL CKP A+P+  + KL    G    NP  Y+RL+G+ IYLT+
Sbjct: 507 FCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTI 566

Query: 144 TRPDISFTVHTLSQYMNAPTTVHLQAAKRLLRYLAGSPSQGILLASSS 1
           TRPD+S+ VH LSQ+M AP   H +AA RL+RYL GSP+QGI L S S
Sbjct: 567 TRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDS 614


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