BLASTX nr result
ID: Bupleurum21_contig00032333
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Bupleurum21_contig00032333 (803 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|2... 357 2e-96 ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi... 355 8e-96 ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 328 6e-88 ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containi... 327 2e-87 ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containi... 322 6e-86 >ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa] Length = 442 Score = 357 bits (916), Expect = 2e-96 Identities = 171/267 (64%), Positives = 202/267 (75%) Frame = -1 Query: 803 DGFMFPRVLKACXXXXXXXXXXXXHRHVIRHGVGNDRYILNGLVDMYGKCGDIVKARRVF 624 D F FPRVLKAC HR ++R G ND ++LN LVDMY KCGDIVKARR+F Sbjct: 111 DQFTFPRVLKACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDMYAKCGDIVKARRIF 170 Query: 623 DKIVCKDLVSWNTMLTGYVRHELLHEALHVFQQMIDDEFEPDSFAVSTILAGGLPMKLGA 444 DKI CKD +SWN+MLTGY+RH L+ EALH F M+ D E DS AVSTILA ++ Sbjct: 171 DKIDCKDSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAVSTILANVSSFEVAV 230 Query: 443 QIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDIVSWNSIISAHCKHP 264 QIHGW++RRG E + SIANSLI +YSN +LDRA WLF+ MP++DIVSWNSIISAHCK Sbjct: 231 QIHGWIVRRGMEWDFSIANSLIAVYSNGRKLDRARWLFDHMPKKDIVSWNSIISAHCKDL 290 Query: 263 DALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELYSIMRNKYKINPVMEHYACM 84 AL YFE M LPDK+TFVSLLS CAHLG+V+DG+ L+S+M+ KY+INP+MEHYACM Sbjct: 291 KALTYFELMERDGALPDKITFVSLLSACAHLGLVKDGERLFSLMKAKYQINPIMEHYACM 350 Query: 83 VNLYGRAGLIGEAYDVIKDHMEFEPGP 3 VNLYGRAGLI EAY +I+D MEFE GP Sbjct: 351 VNLYGRAGLINEAYAIIRDQMEFEAGP 377 Score = 83.6 bits (205), Expect = 5e-14 Identities = 48/176 (27%), Positives = 98/176 (55%), Gaps = 8/176 (4%) Frame = -1 Query: 689 ILNGLVDMYGKCGDIVKARRVFDKIVCK--DLVSWNTMLTGYVRHELLHEALHVFQQMID 516 I + LV +Y CGD+ A +VFD++ + WN+++ GY L +A+ ++ QM + Sbjct: 46 ISSKLVRLYSSCGDVEVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDAMALYFQMEE 105 Query: 515 DEFEPDSFAVSTIL--AGGLPM-KLGAQIHGWVLRRGAECNLSIANSLIVLYSNNSRLDR 345 + EPD F +L GG+ + ++G +H ++R G + + N+L+ +Y+ + + Sbjct: 106 EGVEPDQFTFPRVLKACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDMYAKCGDIVK 165 Query: 344 ASWLFNQMPERDIVSWNSIISAHCKH---PDALVYFERMMNTDVLPDKVTFVSLLS 186 A +F+++ +D +SWNS+++ + +H +AL F M++ + D V ++L+ Sbjct: 166 ARRIFDKIDCKDSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAVSTILA 221 >ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Vitis vinifera] gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera] Length = 516 Score = 355 bits (910), Expect = 8e-96 Identities = 172/267 (64%), Positives = 206/267 (77%) Frame = -1 Query: 803 DGFMFPRVLKACXXXXXXXXXXXXHRHVIRHGVGNDRYILNGLVDMYGKCGDIVKARRVF 624 D F FPRVLKAC HRHV+R G +D ++LN LVDMY KCGDIVKAR+VF Sbjct: 181 DRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVF 240 Query: 623 DKIVCKDLVSWNTMLTGYVRHELLHEALHVFQQMIDDEFEPDSFAVSTILAGGLPMKLGA 444 DKIVC+D VSWN+MLTGY+RH L +AL +F++M+ FEPD+ A+ST++ G +KL Sbjct: 241 DKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSLKLAG 300 Query: 443 QIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDIVSWNSIISAHCKHP 264 QIHGWVLRRG + NLSIANSLIVLYSN+ +LD+A WLF+ MPERD+VSWNSIISAH K Sbjct: 301 QIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIISAHRKDL 360 Query: 263 DALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELYSIMRNKYKINPVMEHYACM 84 A+ YF RM DVLPD VTFVSLLS CAHLG+V+DG+ L+S+MR Y + P MEHYACM Sbjct: 361 KAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACM 420 Query: 83 VNLYGRAGLIGEAYDVIKDHMEFEPGP 3 VNLYGRAGLI EAY++I+ MEFE GP Sbjct: 421 VNLYGRAGLIEEAYEIIEKRMEFEAGP 447 Score = 79.7 bits (195), Expect = 7e-13 Identities = 48/172 (27%), Positives = 96/172 (55%), Gaps = 8/172 (4%) Frame = -1 Query: 677 LVDMYGKCGDIVKARRVFDKIVCKD--LVSWNTMLTGYVRHELLHEALHVFQQMIDDEFE 504 L+ +Y G I +A R+FD++ ++ +WN++++GY L +A+ ++ QM ++ Sbjct: 120 LLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVV 179 Query: 503 PDSFAVSTIL--AGGL-PMKLGAQIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWL 333 PD F +L GG+ + +G ++H V+R G + + N+L+ +Y+ + +A + Sbjct: 180 PDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKV 239 Query: 332 FNQMPERDIVSWNSIISAHCKHP---DALVYFERMMNTDVLPDKVTFVSLLS 186 F+++ RD VSWNS+++ + +H AL F RM+ PD V ++++ Sbjct: 240 FDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVT 291 Score = 61.6 bits (148), Expect = 2e-07 Identities = 46/188 (24%), Positives = 96/188 (51%), Gaps = 9/188 (4%) Frame = -1 Query: 572 YVRHELLHEALHVFQQMIDDEFEPDSFAVSTILAGGLPMKL---GAQIHGWVLRRGAECN 402 + + + L L Q I D D+ S++L ++ G +IH + + Sbjct: 54 HTKLQALEALLRDLQASIQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKS 113 Query: 401 LSIANSLIVLYSNNSRLDRASWLFNQMPERD--IVSWNSIISAHCK---HPDALVYFERM 237 +++++ L+ LY++ R++ A LF+QM R+ +WNS+IS + + + DA+ + +M Sbjct: 114 VALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQM 173 Query: 236 MNTDVLPDKVTFVSLLSTCAHLGMVRDGDELY-SIMRNKYKINPVMEHYACMVNLYGRAG 60 V+PD+ TF +L C +G + G+E++ ++R + + + + +V++Y + G Sbjct: 174 EEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLN--ALVDMYAKCG 231 Query: 59 LIGEAYDV 36 I +A V Sbjct: 232 DIVKARKV 239 >ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Cucumis sativus] Length = 489 Score = 328 bits (842), Expect = 6e-88 Identities = 162/267 (60%), Positives = 194/267 (72%) Frame = -1 Query: 803 DGFMFPRVLKACXXXXXXXXXXXXHRHVIRHGVGNDRYILNGLVDMYGKCGDIVKARRVF 624 D F FPRVLKAC HRHV+R G D ++LN LVDMY KCG IV+AR+VF Sbjct: 156 DNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVF 215 Query: 623 DKIVCKDLVSWNTMLTGYVRHELLHEALHVFQQMIDDEFEPDSFAVSTILAGGLPMKLGA 444 D+I KD+VSWN+MLTGY RH L EAL +F QMI + +EPDS A+ST+L+ MK Sbjct: 216 DQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKL 275 Query: 443 QIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDIVSWNSIISAHCKHP 264 IHGWV+R G E NLSIANSLIV+Y+ +L+RA WLF QMP++D+VSWNSIISAH Sbjct: 276 HIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSA 335 Query: 263 DALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELYSIMRNKYKINPVMEHYACM 84 +AL YFE M + V PD VTFVSLLSTCAHLG+V++G ELY +M+ KY I P +EHYACM Sbjct: 336 EALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIEHYACM 395 Query: 83 VNLYGRAGLIGEAYDVIKDHMEFEPGP 3 VNLYGRAG+I EAY +I ME E GP Sbjct: 396 VNLYGRAGMIEEAYKIITKGMEIEAGP 422 Score = 94.7 bits (234), Expect = 2e-17 Identities = 58/193 (30%), Positives = 111/193 (57%), Gaps = 8/193 (4%) Frame = -1 Query: 725 HVIRHGVGNDRYILNGLVDMYGKCGDIVKARRVFDKIVCKDL--VSWNTMLTGYVRHELL 552 +++R VG I + L+ +Y G + A +VFD++ ++ +WN++++GY L Sbjct: 83 NLLRRNVG----ISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLY 138 Query: 551 HEALHVFQQMIDDEFEPDSFAVSTIL--AGGL-PMKLGAQIHGWVLRRGAECNLSIANSL 381 +AL ++ QM ++ EPD+F +L GG+ +++G +H V+R G ++ + N+L Sbjct: 139 EDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNAL 198 Query: 380 IVLYSNNSRLDRASWLFNQMPERDIVSWNSIISAHCKHP---DALVYFERMMNTDVLPDK 210 + +YS + RA +F+Q+ +DIVSWNS+++ + +H +AL F++M+ PD Sbjct: 199 VDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDS 258 Query: 209 VTFVSLLSTCAHL 171 V +LLS + + Sbjct: 259 VALSTLLSNISSM 271 Score = 56.6 bits (135), Expect = 6e-06 Identities = 39/152 (25%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Frame = -1 Query: 449 GAQIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDI--VSWNSIISAH 276 G +IH + N+ I++ L+ LY++ ++ A +F++M R+ +WNS+IS + Sbjct: 73 GIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGY 132 Query: 275 CK---HPDALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELY-SIMRNKYKINP 108 + + DAL + +M V PD TF +L C +G ++ G+ ++ ++R+ + + Sbjct: 133 AELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDV 192 Query: 107 VMEHYACMVNLYGRAGLIGEAYDVIKDHMEFE 12 + + +V++Y + G I A V D +E++ Sbjct: 193 FVLN--ALVDMYSKCGCIVRARKVF-DQIEYK 221 >ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Cucumis sativus] Length = 489 Score = 327 bits (838), Expect = 2e-87 Identities = 161/267 (60%), Positives = 194/267 (72%) Frame = -1 Query: 803 DGFMFPRVLKACXXXXXXXXXXXXHRHVIRHGVGNDRYILNGLVDMYGKCGDIVKARRVF 624 D F FPRVLKAC HRHV+R G D ++LN LVDMY KCG IV+AR+VF Sbjct: 156 DNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVF 215 Query: 623 DKIVCKDLVSWNTMLTGYVRHELLHEALHVFQQMIDDEFEPDSFAVSTILAGGLPMKLGA 444 D+I KD+VSWN+MLTGY RH L EAL +F QMI + +EPDS A+ST+L+ MK Sbjct: 216 DQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKL 275 Query: 443 QIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDIVSWNSIISAHCKHP 264 IHGWV+R G E NLSIANSLIV+Y+ +L+RA WLF QMP++D+VSWNSIISAH Sbjct: 276 HIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSA 335 Query: 263 DALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELYSIMRNKYKINPVMEHYACM 84 +AL YFE M + V PD VTFVSLLSTCAHLG+V++G +LY +M+ KY I P +EHYACM Sbjct: 336 EALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACM 395 Query: 83 VNLYGRAGLIGEAYDVIKDHMEFEPGP 3 VNLYGRAG+I EAY +I ME E GP Sbjct: 396 VNLYGRAGMIEEAYKIITKGMEIEAGP 422 Score = 94.7 bits (234), Expect = 2e-17 Identities = 58/193 (30%), Positives = 111/193 (57%), Gaps = 8/193 (4%) Frame = -1 Query: 725 HVIRHGVGNDRYILNGLVDMYGKCGDIVKARRVFDKIVCKDL--VSWNTMLTGYVRHELL 552 +++R VG I + L+ +Y G + A +VFD++ ++ +WN++++GY L Sbjct: 83 NLLRRNVG----ISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLY 138 Query: 551 HEALHVFQQMIDDEFEPDSFAVSTIL--AGGL-PMKLGAQIHGWVLRRGAECNLSIANSL 381 +AL ++ QM ++ EPD+F +L GG+ +++G +H V+R G ++ + N+L Sbjct: 139 EDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNAL 198 Query: 380 IVLYSNNSRLDRASWLFNQMPERDIVSWNSIISAHCKHP---DALVYFERMMNTDVLPDK 210 + +YS + RA +F+Q+ +DIVSWNS+++ + +H +AL F++M+ PD Sbjct: 199 VDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDS 258 Query: 209 VTFVSLLSTCAHL 171 V +LLS + + Sbjct: 259 VALSTLLSNISSM 271 Score = 56.6 bits (135), Expect = 6e-06 Identities = 39/152 (25%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Frame = -1 Query: 449 GAQIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDI--VSWNSIISAH 276 G +IH + N+ I++ L+ LY++ ++ A +F++M R+ +WNS+IS + Sbjct: 73 GIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGY 132 Query: 275 CK---HPDALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELY-SIMRNKYKINP 108 + + DAL + +M V PD TF +L C +G ++ G+ ++ ++R+ + + Sbjct: 133 AELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDV 192 Query: 107 VMEHYACMVNLYGRAGLIGEAYDVIKDHMEFE 12 + + +V++Y + G I A V D +E++ Sbjct: 193 FVLN--ALVDMYSKCGCIVRARKVF-DQIEYK 221 >ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Glycine max] Length = 526 Score = 322 bits (825), Expect = 6e-86 Identities = 154/259 (59%), Positives = 195/259 (75%) Frame = -1 Query: 803 DGFMFPRVLKACXXXXXXXXXXXXHRHVIRHGVGNDRYILNGLVDMYGKCGDIVKARRVF 624 D F FPRVLK C HRH IR G D +ILN LVDMY KCGDIVKAR+VF Sbjct: 192 DLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVF 251 Query: 623 DKIVCKDLVSWNTMLTGYVRHELLHEALHVFQQMIDDEFEPDSFAVSTILAGGLPMKLGA 444 DK+ +D VSWN+MLT YV H L +A+++F+QM+ + EPDS ++ST+L G + LG Sbjct: 252 DKMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGV 311 Query: 443 QIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDIVSWNSIISAHCKHP 264 QIHGWV+ +G E NLSIANSLI++YSN+ RL++A W+FN MPERD+VSWNSIISAHCK Sbjct: 312 QIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHCKRR 371 Query: 263 DALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELYSIMRNKYKINPVMEHYACM 84 +AL +FE+M V PDK+TFVS+LS CA+LG+++DG+ L+++M KYKI P+MEHY CM Sbjct: 372 EALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIKPIMEHYGCM 431 Query: 83 VNLYGRAGLIGEAYDVIKD 27 VNLYGRAGLI +AY +I D Sbjct: 432 VNLYGRAGLIKKAYSIIVD 450 Score = 92.0 bits (227), Expect = 1e-16 Identities = 54/183 (29%), Positives = 103/183 (56%), Gaps = 8/183 (4%) Frame = -1 Query: 689 ILNGLVDMYGKCGDIVKARRVFDKIVCKDLVS--WNTMLTGYVRHELLHEALHVFQQMID 516 I + L+ +Y CG + A +FD++ +D + WN++++GY + EA+ ++ QM++ Sbjct: 127 ISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVE 186 Query: 515 DEFEPDSFAVSTIL---AGGLPMKLGAQIHGWVLRRGAECNLSIANSLIVLYSNNSRLDR 345 + E D F +L AG +++G ++H +R G + I N+L+ +YS + + Sbjct: 187 EGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVK 246 Query: 344 ASWLFNQMPERDIVSWNSIISAHCKH---PDALVYFERMMNTDVLPDKVTFVSLLSTCAH 174 A +F++MP RD VSWNS+++A+ H A+ F +M+ PD V+ ++L+ + Sbjct: 247 ARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSS 306 Query: 173 LGM 165 LG+ Sbjct: 307 LGL 309 Score = 58.9 bits (141), Expect = 1e-06 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 7/156 (4%) Frame = -1 Query: 449 GAQIHGWVLRRGAECNLSIANSLIVLYSNNSRLDRASWLFNQMPERDIVS--WNSIISAH 276 G ++H + N+ I++ L+ LY++ LD A LF+QM +RD + WNS+IS + Sbjct: 109 GIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGY 168 Query: 275 CK---HPDALVYFERMMNTDVLPDKVTFVSLLSTCAHLGMVRDGDELYSIMRNKYKINPV 105 + + +A+ + +M+ V D TF +L CA +G V+ G+E++ R+ + Sbjct: 169 AQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVH---RHAIRAGFA 225 Query: 104 MEHYA--CMVNLYGRAGLIGEAYDVIKDHMEFEPGP 3 + + +V++Y + G D++K F+ P Sbjct: 226 ADGFILNALVDMYSKCG------DIVKARKVFDKMP 255