BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032257
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN62895.1| hypothetical protein VITISV_021518 [Vitis vinifera]    65   7e-09
gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subc...    64   1e-08
gb|AAM08642.1|AC108883_15 Putative copia-type pol polyprotein [O...    64   1e-08
gb|AAG59661.1|AC084319_19 putative copia-type pol polyprotein [O...    64   1e-08
gb|AAX94887.1| retrotransposon protein, putative, Ty1-copia sub-...    64   1e-08

>emb|CAN62895.1| hypothetical protein VITISV_021518 [Vitis vinifera]
          Length = 573

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 36/74 (48%), Positives = 47/74 (63%)
 Frame = +3

Query: 57  PKSWKRGRTNEKFVWRRDHPTDNIIGDSSARMRTRKSVANNFAMDSCFLSHSEPKSIEDA 236
           PK WK       FV   +HP D IIG+ S+R+RTR S+  N   +  F+SH EPK+I+DA
Sbjct: 27  PKDWK-------FVI--NHPQDQIIGNPSSRVRTRSSL-RNICNNLAFISHIEPKNIKDA 76

Query: 237 LEDADWVNAMQEEL 278
           L D +W+  MQEEL
Sbjct: 77  LVDENWMTVMQEEL 90


>gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1991

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +3

Query: 102  RRDHPTDNIIGDSSARMRTRKSVANNFAMDSCFLSHSEPKSIEDALEDADWVNAMQEEL 278
            +RDHPTDNI+GD +  + TR  +AN F     F+S  EP  +E+AL D DWV AMQEEL
Sbjct: 1007 QRDHPTDNILGDINKGVSTRSRIAN-FCEHYSFVSSLEPLRVEEALNDPDWVMAMQEEL 1064


>gb|AAM08642.1|AC108883_15 Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
          Length = 1866

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +3

Query: 102  RRDHPTDNIIGDSSARMRTRKSVANNFAMDSCFLSHSEPKSIEDALEDADWVNAMQEEL 278
            +RDHPTDNI+GD +  + TR  +AN F     F+S  EP  +E+AL D DWV AMQEEL
Sbjct: 882  QRDHPTDNILGDINKGVSTRSRIAN-FCEHYSFVSSLEPLRVEEALNDPDWVMAMQEEL 939


>gb|AAG59661.1|AC084319_19 putative copia-type pol polyprotein [Oryza sativa Japonica Group]
          Length = 1778

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/59 (55%), Positives = 38/59 (64%)
 Frame = +3

Query: 102  RRDHPTDNIIGDSSARMRTRKSVANNFAMDSCFLSHSEPKSIEDALEDADWVNAMQEEL 278
            +RDHP DNI+GD    + TR  VAN F     F+S  EP  +EDAL D DWV AMQEEL
Sbjct: 1124 QRDHPVDNILGDIRKGVTTRSRVAN-FCQHYSFVSSLEPTRVEDALGDPDWVMAMQEEL 1181


>gb|AAX94887.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550139|gb|ABA92936.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1718

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/59 (55%), Positives = 38/59 (64%)
 Frame = +3

Query: 102 RRDHPTDNIIGDSSARMRTRKSVANNFAMDSCFLSHSEPKSIEDALEDADWVNAMQEEL 278
           +RDHP DNI+GD    + TR  VAN F     F+S  EP  +EDAL D DWV AMQEEL
Sbjct: 823 QRDHPVDNILGDIRKGVTTRSRVAN-FCQHYSFVSSLEPTRVEDALGDPDWVMAMQEEL 880