BLASTX nr result

ID: Bupleurum21_contig00032239 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032239
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257...    99   1e-28
ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like...   104   1e-28
ref|XP_002518251.1| conserved hypothetical protein [Ricinus comm...   100   5e-28
ref|XP_002891556.1| hypothetical protein ARALYDRAFT_891939 [Arab...   100   2e-27
ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana] ...   100   2e-27

>ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257645 [Vitis vinifera]
           gi|297737934|emb|CBI27135.3| unnamed protein product
           [Vitis vinifera]
          Length = 552

 Score = 98.6 bits (244), Expect(2) = 1e-28
 Identities = 45/80 (56%), Positives = 60/80 (75%), Gaps = 8/80 (10%)
 Frame = -1

Query: 356 FEIKGIERLDTQWFTTPRP--------GEYVFMESSISSLVSNQIISSGATKTFVVRTLL 201
           FEIKGIE+LD+QW+ T +P        GE+ F++ +  S+VSNQI+S+GA KT+V RT L
Sbjct: 87  FEIKGIEKLDSQWYATQKPLPGSKQRRGEHTFLDCATPSIVSNQIVSAGAVKTYVARTEL 146

Query: 200 PNIIPPSYRGGAIRYLYYVK 141
           P+I+PPSYRG  IRY YYV+
Sbjct: 147 PSIVPPSYRGATIRYFYYVR 166



 Score = 53.1 bits (126), Expect(2) = 1e-28
 Identities = 23/45 (51%), Positives = 35/45 (77%)
 Frame = -3

Query: 135 ISGQYLILENGQFAGESIRDVSQLVARIPVQLWIPQKINGLLYED 1
           +SG++L+LENG    ES +D+ +L ARIP+Q+W+ QK +GLL E+
Sbjct: 169 LSGRWLVLENGHSPRESRKDLIELEARIPLQIWVTQKTSGLLIEE 213


>ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like protein [Medicago
           truncatula] gi|355520854|gb|AET01308.1| Retrograde Golgi
           transport protein RGP1-like protein [Medicago
           truncatula]
          Length = 529

 Score =  104 bits (259), Expect(2) = 1e-28
 Identities = 50/81 (61%), Positives = 65/81 (80%), Gaps = 8/81 (9%)
 Frame = -1

Query: 356 FEIKGIERLDTQWFTTPRP--------GEYVFMESSISSLVSNQIISSGATKTFVVRTLL 201
           FEI+GIE+LDTQWF T +P        GE+VF++SS   LV+NQII++G +K++VVRT+L
Sbjct: 68  FEIRGIEKLDTQWFATQKPLPGSRQRRGEHVFVDSSTPILVANQIINAGTSKSYVVRTML 127

Query: 200 PNIIPPSYRGGAIRYLYYVKS 138
           P+IIPPSY+G  IRYLYYVKS
Sbjct: 128 PSIIPPSYKGSNIRYLYYVKS 148



 Score = 47.4 bits (111), Expect(2) = 1e-28
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = -3

Query: 135 ISGQYLILENGQFAGESIRDVSQLVARIPVQLWIPQKINGLLYED 1
           I+G +LILENGQ   E   DV+ L  RIP+Q+W+ QK +G   +D
Sbjct: 150 ITGGWLILENGQSRTEPTNDVTDLEVRIPLQIWVNQKSSGFPLDD 194


>ref|XP_002518251.1| conserved hypothetical protein [Ricinus communis]
           gi|223542598|gb|EEF44137.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 528

 Score =  100 bits (250), Expect(2) = 5e-28
 Identities = 50/80 (62%), Positives = 62/80 (77%), Gaps = 8/80 (10%)
 Frame = -1

Query: 356 FEIKGIERLDTQWFTTPRP--------GEYVFMESSISSLVSNQIISSGATKTFVVRTLL 201
           FEIKGIE+LD QWF+T +P        GE+VFM SSI SLVSNQI+SS A+K++VVR  L
Sbjct: 84  FEIKGIEKLDPQWFSTHKPLPGSAHSRGEHVFMVSSIPSLVSNQILSSAASKSYVVRVEL 143

Query: 200 PNIIPPSYRGGAIRYLYYVK 141
           P+I+PP++RG  IRY YYVK
Sbjct: 144 PSILPPTFRGSTIRYFYYVK 163



 Score = 48.5 bits (114), Expect(2) = 5e-28
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = -3

Query: 135 ISGQYLILENGQFAGESIRDVSQLVARIPVQLWIPQKINGLLYED 1
           + G++L LENG    ES +D+ +L AR+P+ +W+ QK NGLL E+
Sbjct: 166 LCGRWLTLENGHSHRESSKDLIELDARVPLNIWVTQKSNGLLMEE 210


>ref|XP_002891556.1| hypothetical protein ARALYDRAFT_891939 [Arabidopsis lyrata subsp.
           lyrata] gi|297337398|gb|EFH67815.1| hypothetical protein
           ARALYDRAFT_891939 [Arabidopsis lyrata subsp. lyrata]
          Length = 527

 Score =  100 bits (248), Expect(2) = 2e-27
 Identities = 45/81 (55%), Positives = 61/81 (75%), Gaps = 8/81 (9%)
 Frame = -1

Query: 356 FEIKGIERLDTQWFTTPRP--------GEYVFMESSISSLVSNQIISSGATKTFVVRTLL 201
           FE+KG+E+LD QWF+T +P        GE++F++SS  SL+SNQI+S GA  T +VR +L
Sbjct: 67  FEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFLDSSTPSLISNQILSPGAKMTLMVRAIL 126

Query: 200 PNIIPPSYRGGAIRYLYYVKS 138
           P IIPPSY+G  +RYLYY+KS
Sbjct: 127 PQIIPPSYKGATLRYLYYIKS 147



 Score = 47.4 bits (111), Expect(2) = 2e-27
 Identities = 20/45 (44%), Positives = 32/45 (71%)
 Frame = -3

Query: 135 ISGQYLILENGQFAGESIRDVSQLVARIPVQLWIPQKINGLLYED 1
           + G+++ LEN QF  +S +D  ++  RIP+Q+W+ QK NGLL E+
Sbjct: 149 LCGRWMALENSQFYKDSTKDFIEVETRIPLQVWVIQKNNGLLLEE 193


>ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana]
           gi|20268711|gb|AAM14059.1| unknown protein [Arabidopsis
           thaliana] gi|21689887|gb|AAM67504.1| unknown protein
           [Arabidopsis thaliana] gi|332194396|gb|AEE32517.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 532

 Score =  100 bits (248), Expect(2) = 2e-27
 Identities = 45/81 (55%), Positives = 61/81 (75%), Gaps = 8/81 (9%)
 Frame = -1

Query: 356 FEIKGIERLDTQWFTTPRP--------GEYVFMESSISSLVSNQIISSGATKTFVVRTLL 201
           FE+KG+E+LD QWF+T +P        GE++F++SS  SL+SNQI+S GA  T +VR +L
Sbjct: 72  FEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFLDSSTPSLISNQILSPGAKMTLMVRAIL 131

Query: 200 PNIIPPSYRGGAIRYLYYVKS 138
           P IIPPSY+G  +RYLYY+KS
Sbjct: 132 PQIIPPSYKGATLRYLYYIKS 152



 Score = 47.0 bits (110), Expect(2) = 2e-27
 Identities = 20/45 (44%), Positives = 32/45 (71%)
 Frame = -3

Query: 135 ISGQYLILENGQFAGESIRDVSQLVARIPVQLWIPQKINGLLYED 1
           + G+++ LEN QF  +S +D  ++  RIP+Q+W+ QK NGLL E+
Sbjct: 154 LCGRWMALENSQFYKDSTQDFIEVETRIPLQVWVIQKNNGLLLEE 198


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