BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00032037
         (569 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   117   1e-24
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    96   3e-18
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...    89   4e-16
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    87   2e-15
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...    87   2e-15

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  117 bits (294), Expect = 1e-24
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
 Frame = +1

Query: 130  HELRIDSSMGNLVYWKDGNQGKFSIRSVLRIMRNETDVIDDDC---WNIVWNAPVQQRIR 300
            HEL  D    + +YW     G F+I S + I RN  ++ + D    W+ VW  P  QR+R
Sbjct: 999  HELIDDEEAIDDIYWNGSPSGGFTIGSAMNITRN-AELANMDAHPKWSAVWKIPTPQRVR 1057

Query: 301  AFLWLACHDRILGNSNRFKRKLIDDPKCSICGAQEESTLHILRDCPAARVVWRKVLTLSI 480
             F+WLA  DR++ NSNRF R+L DDP+C +CG  EE+T HILR CP AR++WRK   L +
Sbjct: 1058 FFIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILWRK---LGM 1114

Query: 481  SGQFYQGSIK--EWIVRNM 531
             G+  +  I    WI +N+
Sbjct: 1115 LGEHNREEINLGSWITKNL 1133


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 96.3 bits (238), Expect = 3e-18
 Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
 Frame = +1

Query: 157  GNLVYWKDGNQGKFSIRSVLRIMRNETDVID----DDCWNIVWNAPVQQRIRAFLWLACH 324
            G+ + WK    G F++RS   +++   DV D       +N +W     +R+R F+WL   
Sbjct: 867  GDEISWKGTQDGAFTVRSAYSLLQG--DVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQ 924

Query: 325  DRILGNSNRFKRKLIDDPKCSICGAQEESTLHILRDCPAARVVWRKVLTLSISGQFYQGS 504
            + I+ N  R +R L ++  CS+C   EE+ LH+LRDCPA   +WR++L L    +F+  S
Sbjct: 925  NVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQS 984

Query: 505  IKEWIVRNME 534
            + EW+  NM+
Sbjct: 985  LLEWLFTNMD 994


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score = 89.4 bits (220), Expect = 4e-16
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
 Frame = +1

Query: 172 WKDGNQGKFSIRSVLRIMRNETDVIDDDC----WNIVWNAPVQQRIRAFLWLACHDRILG 339
           W     G+F++ S   I     D I   C    ++ VW   V +R R FLWL  +  +L 
Sbjct: 313 WVGTENGRFTVSSAYLIQ--SVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGNQVVLT 370

Query: 340 NSNRFKRKLIDDPKCSICGAQEESTLHILRDCPAARVVWRKVLTLSISGQFYQGSIKEWI 519
           N+ R +R + D   C +C    ES +H+LRDCPA   +W +V+ +    +F++ S+ EW+
Sbjct: 371 NAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWM 430

Query: 520 VRNMENPDANDDRRSW 567
             N++   ++ +RRSW
Sbjct: 431 YGNLKE-RSDSERRSW 445


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 39/132 (29%), Positives = 65/132 (49%)
 Frame = +1

Query: 172 WKDGNQGKFSIRSVLRIMRNETDVIDDDCWNIVWNAPVQQRIRAFLWLACHDRILGNSNR 351
           W   N  KF+++S   + +     +  D W  +WN     RI+ F+WLA H RIL N  R
Sbjct: 436 WGGTNTLKFTVQSAYNLQQENPFAVGGD-WKTLWNWKGPHRIQTFIWLAAHGRILTNYRR 494

Query: 352 FKRKLIDDPKCSICGAQEESTLHILRDCPAARVVWRKVLTLSISGQFYQGSIKEWIVRNM 531
            K  +   P C  C  ++E+ +H+LRDC  +  VW +++  +    F+    +EW+  N+
Sbjct: 495 SKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFFSFDCREWVFNNL 554

Query: 532 ENPDANDDRRSW 567
                 D+  +W
Sbjct: 555 NKKGIGDNPATW 566


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 970

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
 Frame = +1

Query: 145 DSSMGNLVYWKDGNQGKFSIRSVLRIMRNETDV--IDDDCWNIVWNAPVQQRIRAFLWLA 318
           D+ + + + WK    G F++RS   +++ E +   +       +W     +R+R F+WL 
Sbjct: 604 DALLSDELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLV 663

Query: 319 CHDRILGNSNRFKRKLIDDPKCSICGAQEESTLHILRDCPAARVVWRKVLTLSISGQFYQ 498
            H  I+ N  R +R L D   CS+C   +ES LH+LRDCPA   +W+++L      +F+ 
Sbjct: 664 SHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFF- 722

Query: 499 GSIKEWIVRNME 534
            S  EW+  N++
Sbjct: 723 -SQFEWLFTNLD 733