BLASTX nr result
ID: Bupleurum21_contig00032020
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00032020
(583 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containi... 283 2e-74
ref|NP_178398.1| pentatricopeptide repeat-containing protein [Ar... 271 8e-71
ref|XP_002875182.1| pentatricopeptide repeat-containing protein ... 267 1e-69
gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thali... 267 1e-69
ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containi... 266 2e-69
>ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera] gi|296086362|emb|CBI31951.3| unnamed
protein product [Vitis vinifera]
Length = 595
Score = 283 bits (723), Expect = 2e-74
Identities = 135/194 (69%), Positives = 159/194 (81%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FDQ+P PDI+LFN MARGYAR DTPL A LF L G+ PD YTFPSLLKACA KAL
Sbjct: 78 FDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKAL 137
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
+EG+QLHCL IK GLS+++YVCP LINMYT C++M VF +I +PCVVTYNAMI+GY
Sbjct: 138 EEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGY 197
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAYVKEHGFNQYV 541
R S+PN AL LFRELQA+ ++PT VTML VLSSC +LGALDLGKW+H YVK++GFN++V
Sbjct: 198 ARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFV 257
Query: 542 KVNTALIDMYAKCG 583
KV+TALIDMYAKCG
Sbjct: 258 KVDTALIDMYAKCG 271
Score = 94.4 bits (233), Expect = 1e-17
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 1/195 (0%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FD++ P ++ +N M GYAR P A+ LF + + P T S+L +CA AL
Sbjct: 179 FDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGAL 238
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
D GK +H V K G + + V ALI+MY +C + CVF + ++AMI Y
Sbjct: 239 DLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAY 298
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLG-KWIHAYVKEHGFNQY 538
A+ LF+E++ EP +T LG+L +C G ++ G ++ + ++G
Sbjct: 299 AIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPG 358
Query: 539 VKVNTALIDMYAKCG 583
+K ++D+ + G
Sbjct: 359 IKHYGCMVDLLGRAG 373
>ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g02980 gi|3461822|gb|AAC32916.1| hypothetical protein
[Arabidopsis thaliana] gi|330250557|gb|AEC05651.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 603
Score = 271 bits (692), Expect = 8e-71
Identities = 124/194 (63%), Positives = 152/194 (78%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
F+ + PDI++FN MARGY+R PL LFV+ L G+ PD YTFPSLLKACA KAL
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKAL 145
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
+EG+QLHCL +K GL D++YVCP LINMYTEC D+ S CVF RI++PCVV YNAMI+GY
Sbjct: 146 EEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGY 205
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAYVKEHGFNQYV 541
R ++PN AL LFRE+Q K ++P +T+L VLSSC +LG+LDLGKWIH Y K+H F +YV
Sbjct: 206 ARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYV 265
Query: 542 KVNTALIDMYAKCG 583
KVNTALIDM+AKCG
Sbjct: 266 KVNTALIDMFAKCG 279
Score = 95.9 bits (237), Expect = 4e-18
Identities = 52/195 (26%), Positives = 102/195 (52%), Gaps = 1/195 (0%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FD++ P ++ +N M GYAR + P A+ LF + G + P+ T S+L +CA +L
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSL 246
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
D GK +H K+ + V ALI+M+ +C + +F ++ ++AMI Y
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAY 306
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLG-KWIHAYVKEHGFNQY 538
+ ++ +F ++++ ++P +T LG+L++C G ++ G K+ V + G
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366
Query: 539 VKVNTALIDMYAKCG 583
+K +++D+ ++ G
Sbjct: 367 IKHYGSMVDLLSRAG 381
Score = 63.9 bits (154), Expect = 2e-08
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Frame = +2
Query: 176 ALDEGKQLHCLVIKYGLSDDIYVCPALINMYTEC---SDMSSGHCVFARIIDPCVVTYNA 346
+L E Q+ IK + D +V LIN TE S MS +F + +P +V +N+
Sbjct: 41 SLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYARHLFEAMSEPDIVIFNS 99
Query: 347 MISGYVRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAYVKEHG 526
M GY R + P LF E+ I P T +L +C + AL+ G+ +H + G
Sbjct: 100 MARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLG 159
Query: 527 FNQYVKVNTALIDMYAKC 580
+ V V LI+MY +C
Sbjct: 160 LDDNVYVCPTLINMYTEC 177
>ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297321020|gb|EFH51441.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 605
Score = 267 bits (682), Expect = 1e-69
Identities = 122/194 (62%), Positives = 152/194 (78%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FD + PDI++FN +ARGY+R PL LFV+ L + PD YTFPSLLKACA KAL
Sbjct: 88 FDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKAL 147
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
+EG+QLHCL +K G+ D++YVCP LINMYTEC D+ + CVF RI++PCVV YNAMI+GY
Sbjct: 148 EEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGY 207
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAYVKEHGFNQYV 541
R ++PN AL LFRE+Q K ++P +T+L VLSSC +LG+LDLGKWIH Y K+HGF +YV
Sbjct: 208 ARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYV 267
Query: 542 KVNTALIDMYAKCG 583
KVNTALIDM+AKCG
Sbjct: 268 KVNTALIDMFAKCG 281
Score = 101 bits (251), Expect = 1e-19
Identities = 55/195 (28%), Positives = 103/195 (52%), Gaps = 1/195 (0%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FD++ P ++ +N M GYAR + P A+ LF + G + P+ T S+L +CA +L
Sbjct: 189 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSL 248
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
D GK +H K+G + V ALI+M+ +C + +F + ++AMI Y
Sbjct: 249 DLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAY 308
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAY-VKEHGFNQY 538
Q N++ +F ++++ ++P +T LG+L++C G ++ G+ ++ V E G
Sbjct: 309 ANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPS 368
Query: 539 VKVNTALIDMYAKCG 583
+K +++D+ + G
Sbjct: 369 IKHYGSMVDLLGRAG 383
>gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 267 bits (682), Expect = 1e-69
Identities = 123/194 (63%), Positives = 151/194 (77%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
F+ + PDI++FN MARGY+R PL LFV+ L G+ PD YTFPSLLKACA KAL
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKAL 145
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
+EG+QLHCL +K GL D++YVCP LINMYTEC D+ S VF RI++PCVV YNAMI+GY
Sbjct: 146 EEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGY 205
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAYVKEHGFNQYV 541
R ++PN AL LFRE+Q K ++P +T+L VLSSC +LG+LDLGKWIH Y K+H F +YV
Sbjct: 206 ARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYV 265
Query: 542 KVNTALIDMYAKCG 583
KVNTALIDM+AKCG
Sbjct: 266 KVNTALIDMFAKCG 279
Score = 94.7 bits (234), Expect = 1e-17
Identities = 52/195 (26%), Positives = 101/195 (51%), Gaps = 1/195 (0%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FD++ P ++ +N M GYAR + P A+ LF + G + P+ T S+L +CA +L
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSL 246
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
D GK +H K+ + V ALI+M+ +C + +F ++ ++AMI Y
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAY 306
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLG-KWIHAYVKEHGFNQY 538
+ ++ +F ++++ ++P +T LG+L++C G ++ G K+ V + G
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366
Query: 539 VKVNTALIDMYAKCG 583
+K +++D+ + G
Sbjct: 367 IKHYGSMVDLLSXAG 381
Score = 63.9 bits (154), Expect = 2e-08
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Frame = +2
Query: 176 ALDEGKQLHCLVIKYGLSDDIYVCPALINMYTEC---SDMSSGHCVFARIIDPCVVTYNA 346
+L E Q+ IK + D +V LIN TE S MS +F + +P +V +N+
Sbjct: 41 SLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYARHLFEAMSEPDIVIFNS 99
Query: 347 MISGYVRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAYVKEHG 526
M GY R + P LF E+ I P T +L +C + AL+ G+ +H + G
Sbjct: 100 MARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLG 159
Query: 527 FNQYVKVNTALIDMYAKC 580
+ V V LI+MY +C
Sbjct: 160 LDDNVYVCPTLINMYTEC 177
>ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 266 bits (680), Expect = 2e-69
Identities = 129/194 (66%), Positives = 153/194 (78%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FD++P PDI+LFN MARGYAR D PL AILL L G+ PD YTF SLLKACAR KAL
Sbjct: 92 FDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKAL 151
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
+EGKQLHCL +K G+ D++YVCP LINMYT C+D+ + VF +I +PCVV YNA+I+
Sbjct: 152 EEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSC 211
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLGKWIHAYVKEHGFNQYV 541
R S+PN AL LFRELQ ++PT VTML LSSC +LGALDLG+WIH YVK++GF+QYV
Sbjct: 212 ARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYV 271
Query: 542 KVNTALIDMYAKCG 583
KVNTALIDMYAKCG
Sbjct: 272 KVNTALIDMYAKCG 285
Score = 92.4 bits (228), Expect = 5e-17
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Frame = +2
Query: 2 FDQLPAPDIILFNYMARGYARIDTPLLAILLFVDTLGFGVCPDYYTFPSLLKACARGKAL 181
FD++ P ++ +N + AR P A+ LF + G+ P T L +CA AL
Sbjct: 193 FDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGAL 252
Query: 182 DEGKQLHCLVIKYGLSDDIYVCPALINMYTECSDMSSGHCVFARIIDPCVVTYNAMISGY 361
D G+ +H V K G + V ALI+MY +C + VF + ++AMI Y
Sbjct: 253 DLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAY 312
Query: 362 VRTSQPNNALFLFRELQAKKIEPTYVTMLGVLSSCGMLGALDLG-KWIHAYVKEHGFNQY 538
+ A+ + RE++ K++P +T LG+L +C G ++ G ++ H+ E+G
Sbjct: 313 ATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPS 372
Query: 539 VKVNTALIDMYAKCG 583
+K +ID+ + G
Sbjct: 373 IKHYGCMIDLLGRAG 387