BLASTX nr result
ID: Bupleurum21_contig00031931
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00031931
(634 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI16054.3| unnamed protein product [Vitis vinifera] 220 1e-55
ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containi... 220 1e-55
ref|XP_002520500.1| pentatricopeptide repeat-containing protein,... 207 2e-51
ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|2... 201 1e-49
ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containi... 199 5e-49
>emb|CBI16054.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 220 bits (561), Expect = 1e-55
Identities = 122/198 (61%), Positives = 143/198 (72%), Gaps = 13/198 (6%)
Frame = +2
Query: 59 MLAFQGPQILQK-HPIHSLHYSSSISAQLTNPSPNF-LSIRPS-----------NNELIQ 199
M AFQ PQ +Q+ H H ++IS P P L++RPS NN LIQ
Sbjct: 1 MWAFQTPQTIQQPHLPKPFHKPTAIS-----PKPQCCLALRPSTTTRSNGDSNNNNPLIQ 55
Query: 200 SLCQKGNLKQALQLLYKESQPTQHTYELLILSCSRQNSLPGAGIVHCRLIRDGFEQDTFL 379
SLC++GNL QALQ+L +E PTQHTYELLILSC+RQNSLP +H LI DG +QD FL
Sbjct: 56 SLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFL 115
Query: 380 ATKLIDMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSLYRRMNMVGV 559
ATKLI+MYSELDSI+ ARKVFD+ R+RT++VWNA+FRALTL G G EVL LYRRMN +GV
Sbjct: 116 ATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGV 175
Query: 560 LSDRFTYTYVLKACVVGE 613
SDRFTYTYVLKACV E
Sbjct: 176 PSDRFTYTYVLKACVASE 193
Score = 56.6 bits (135), Expect = 4e-06
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Frame = +2
Query: 185 NELIQSLCQKGNLKQALQLLYKESQ----PTQHTYELLILSCSRQNS----LPGAGIVHC 340
N L ++L G ++ L L + ++ + TY ++ +C + L +H
Sbjct: 148 NALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHG 207
Query: 341 RLIRDGFEQDTFLATKLIDMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEE 520
++R GFE + T L+DMY+ + A +VFD++ + V W+A+ + G E
Sbjct: 208 HILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLE 267
Query: 521 VLSLYRRMNMVG--VLSDRFTYTYVLKAC 601
L L+R+M + +L + T VL+AC
Sbjct: 268 ALELFRKMMLENQDLLPNSVTMVSVLQAC 296
>ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 220 bits (561), Expect = 1e-55
Identities = 122/198 (61%), Positives = 143/198 (72%), Gaps = 13/198 (6%)
Frame = +2
Query: 59 MLAFQGPQILQK-HPIHSLHYSSSISAQLTNPSPNF-LSIRPS-----------NNELIQ 199
M AFQ PQ +Q+ H H ++IS P P L++RPS NN LIQ
Sbjct: 1 MWAFQTPQTIQQPHLPKPFHKPTAIS-----PKPQCCLALRPSTTTRSNGDSNNNNPLIQ 55
Query: 200 SLCQKGNLKQALQLLYKESQPTQHTYELLILSCSRQNSLPGAGIVHCRLIRDGFEQDTFL 379
SLC++GNL QALQ+L +E PTQHTYELLILSC+RQNSLP +H LI DG +QD FL
Sbjct: 56 SLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFL 115
Query: 380 ATKLIDMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSLYRRMNMVGV 559
ATKLI+MYSELDSI+ ARKVFD+ R+RT++VWNA+FRALTL G G EVL LYRRMN +GV
Sbjct: 116 ATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGV 175
Query: 560 LSDRFTYTYVLKACVVGE 613
SDRFTYTYVLKACV E
Sbjct: 176 PSDRFTYTYVLKACVASE 193
Score = 56.6 bits (135), Expect = 4e-06
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Frame = +2
Query: 185 NELIQSLCQKGNLKQALQLLYKESQ----PTQHTYELLILSCSRQNS----LPGAGIVHC 340
N L ++L G ++ L L + ++ + TY ++ +C + L +H
Sbjct: 148 NALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHG 207
Query: 341 RLIRDGFEQDTFLATKLIDMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEE 520
++R GFE + T L+DMY+ + A +VFD++ + V W+A+ + G E
Sbjct: 208 HILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLE 267
Query: 521 VLSLYRRMNMVG--VLSDRFTYTYVLKAC 601
L L+R+M + +L + T VL+AC
Sbjct: 268 ALELFRKMMLENQDLLPNSVTMVSVLQAC 296
Score = 56.6 bits (135), Expect = 4e-06
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Frame = +2
Query: 191 LIQSLCQKGNLKQALQLLYK---ESQ---PTQHTYELLILSCSRQNSLPGAGIVHCRLIR 352
+I + G +AL+L K E+Q P T ++ +C+ +L ++H ++R
Sbjct: 255 MIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILR 314
Query: 353 DGFEQDTFLATKLIDMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSL 532
G + + + L+ +Y+ ++E +VF+R+ +R V WN++ + + G G + + +
Sbjct: 315 RGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQI 374
Query: 533 YRRMNMVGVLSDRFTYTYVLKAC 601
++ M G+ ++ VL AC
Sbjct: 375 FKEMIDQGLSPSPISFVSVLGAC 397
>ref|XP_002520500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540342|gb|EEF41913.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 414
Score = 207 bits (526), Expect = 2e-51
Identities = 110/192 (57%), Positives = 134/192 (69%), Gaps = 5/192 (2%)
Frame = +2
Query: 59 MLAFQGPQILQKHPIHSLHYSSSISAQLTNPSPNFLSIRPS-----NNELIQSLCQKGNL 223
M AF PQ + P HS +S P F+++ P+ +N+LIQSLC++GNL
Sbjct: 1 MWAFHSPQATTQPPSHSTFFSRPTP----KPPICFVNLNPTIPTANSNKLIQSLCKQGNL 56
Query: 224 KQALQLLYKESQPTQHTYELLILSCSRQNSLPGAGIVHCRLIRDGFEQDTFLATKLIDMY 403
KQAL LL E P QHTYELL+LSC+ QNS A VH L+ +GF+QD FLATKLI+MY
Sbjct: 57 KQALNLLCNEPDPAQHTYELLLLSCTHQNSFLDAQFVHQHLLDNGFDQDPFLATKLINMY 116
Query: 404 SELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSLYRRMNMVGVLSDRFTYT 583
S SI+ ARKVFD+ R RT++V+NA+FRALTL GNGEEVL LYRRMN +G+ SDRFTYT
Sbjct: 117 SSFGSIDNARKVFDKTRSRTLYVYNALFRALTLVGNGEEVLRLYRRMNSIGMPSDRFTYT 176
Query: 584 YVLKACVVGEEL 619
YVLKACV L
Sbjct: 177 YVLKACVASNSL 188
Score = 58.9 bits (141), Expect = 7e-07
Identities = 30/127 (23%), Positives = 65/127 (51%)
Frame = +2
Query: 221 LKQALQLLYKESQPTQHTYELLILSCSRQNSLPGAGIVHCRLIRDGFEQDTFLATKLIDM 400
L + + L K+ P T ++ +C+ +L ++H ++R G + + + L+ M
Sbjct: 264 LFREMMLETKDMCPNSVTMVSVLQACAALAALEQGKLLHGYILRRGLDSILPVISSLVTM 323
Query: 401 YSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSLYRRMNMVGVLSDRFTY 580
Y+ ++ A+ VFD++ +R V WN++ + + G G++ + +++ M GV ++
Sbjct: 324 YARCGKLQLAQHVFDQMDKRDVVSWNSLISSYGVHGFGKKAIQIFKDMTRNGVFPSPISF 383
Query: 581 TYVLKAC 601
VL AC
Sbjct: 384 VSVLGAC 390
Score = 56.6 bits (135), Expect = 4e-06
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Frame = +2
Query: 185 NELIQSLCQKGNLKQALQLLYKESQ----PTQHTYELLILSCSRQNSLPG----AGIVHC 340
N L ++L GN ++ L+L + + + TY ++ +C NSL +H
Sbjct: 141 NALFRALTLVGNGEEVLRLYRRMNSIGMPSDRFTYTYVLKACVASNSLLSLLKKGKEIHA 200
Query: 341 RLIRDGFEQDTFLATKLIDMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEE 520
+++R G+E + T L+DMY+ + A VF + + V W+A+ G E
Sbjct: 201 QILRRGYEAHVHIMTTLVDMYARFGYVSYASCVFSEMSVKNVVSWSAMIACYAKNGRPFE 260
Query: 521 VLSLYRRMNM--VGVLSDRFTYTYVLKAC 601
L L+R M + + + T VL+AC
Sbjct: 261 ALELFREMMLETKDMCPNSVTMVSVLQAC 289
>ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1|
predicted protein [Populus trichocarpa]
Length = 650
Score = 201 bits (510), Expect = 1e-49
Identities = 105/185 (56%), Positives = 133/185 (71%)
Frame = +2
Query: 59 MLAFQGPQILQKHPIHSLHYSSSISAQLTNPSPNFLSIRPSNNELIQSLCQKGNLKQALQ 238
M AFQ P+ + S+ + + + N + NN+LIQSLC++GNL QAL+
Sbjct: 1 MWAFQSPKTTLLPSNATFLPRPSLKPPICSITLNPTASTADNNKLIQSLCKQGNLTQALE 60
Query: 239 LLYKESQPTQHTYELLILSCSRQNSLPGAGIVHCRLIRDGFEQDTFLATKLIDMYSELDS 418
LL E P QHTYELLILSC+ QNSL A VH L+ +GF+QD FLATKLI+MYS DS
Sbjct: 61 LLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDS 120
Query: 419 IECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSLYRRMNMVGVLSDRFTYTYVLKA 598
I+ ARKVFD+ R RT++V+NA+FRAL+L G+GEEVL++YRRMN +G+ SDRFTYTYVLKA
Sbjct: 121 IDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKA 180
Query: 599 CVVGE 613
CV E
Sbjct: 181 CVASE 185
Score = 59.7 bits (143), Expect = 4e-07
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Frame = +2
Query: 191 LIQSLCQKGNLKQALQL---LYKESQ---PTQHTYELLILSCSRQNSLPGAGIVHCRLIR 352
+I + G +AL+L L E+Q P T ++ +C+ +L ++H ++R
Sbjct: 247 MIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILR 306
Query: 353 DGFEQDTFLATKLIDMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSL 532
G + + + L+ MY+ +E ++VFD++ +R V WN++ + + G G++ + +
Sbjct: 307 KGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGI 366
Query: 533 YRRMNMVGVLSDRFTYTYVLKAC 601
+ M GV ++ VL AC
Sbjct: 367 FEEMTYNGVEPSPISFVSVLGAC 389
>ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 199 bits (505), Expect = 5e-49
Identities = 108/193 (55%), Positives = 139/193 (72%), Gaps = 8/193 (4%)
Frame = +2
Query: 59 MLAFQGPQILQKHPIHS-LHYSSSISAQLT------NPSPNFLS-IRPSNNELIQSLCQK 214
M Q PQI++ P S L Y+S +S+++ NPS N ++ I+ +NN+LIQSLC+
Sbjct: 1 MWVLQIPQIVRHAPSQSHLCYNSHVSSRVPVSFVSLNPSANLMNDIKGNNNQLIQSLCKG 60
Query: 215 GNLKQALQLLYKESQPTQHTYELLILSCSRQNSLPGAGIVHCRLIRDGFEQDTFLATKLI 394
GNLKQA+ LL E PTQ T+E LI SC++QNSL VH RL+ GF+QD FLATKLI
Sbjct: 61 GNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLI 120
Query: 395 DMYSELDSIECARKVFDRIRRRTVFVWNAIFRALTLKGNGEEVLSLYRRMNMVGVLSDRF 574
+MY EL SI+ ARKVFD R RT++VWNA+FRAL + G G+E+L LY +MN +G+ SDRF
Sbjct: 121 NMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRF 180
Query: 575 TYTYVLKACVVGE 613
TYT+VLKACVV E
Sbjct: 181 TYTFVLKACVVSE 193
Score = 55.8 bits (133), Expect = 6e-06
Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Frame = +2
Query: 107 SLHYSSSISAQLTNPSPNFLSIRP-----SNNELIQSLCQKGNLKQALQLLYKESQPTQH 271
S+ Y++S+ + P+ NF+S + NE+ + L Q + L +S P
Sbjct: 233 SVSYANSVFCAM--PTKNFVSWSAMIACFAKNEMPMKALE---LFQLMMLEAHDSVPNSV 287
Query: 272 TYELLILSCSRQNSLPGAGIVHCRLIRDGFEQDTFLATKLIDMYSELDSIECARKVFDRI 451
T ++ +C+ +L ++H ++R G + + LI MY I ++VFD +
Sbjct: 288 TMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNM 347
Query: 452 RRRTVFVWNAIFRALTLKGNGEEVLSLYRRMNMVGVLSDRFTYTYVLKAC 601
+ R V WN++ + G G++ + ++ M G ++ VL AC
Sbjct: 348 KNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGAC 397