BLASTX nr result

ID: Bupleurum21_contig00031745 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00031745
         (803 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|2...    58   2e-06
ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g...    57   5e-06
ref|XP_002331319.1| f-box family protein [Populus trichocarpa] g...    56   8e-06

>ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|222873904|gb|EEF11035.1|
           predicted protein [Populus trichocarpa]
          Length = 378

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 22/215 (10%)
 Frame = +1

Query: 55  LPETMWNLPALLTLELNDVELPENITDIFSALVNLQTLTLCFVSVYLQQELVISCPXXXX 234
           LP+++  LP+L TL L   +  +    IFS+  NL+ LT+  + +   +   I       
Sbjct: 164 LPKSL-GLPSLKTLHLGGAQNFDG--KIFSSCPNLENLTIEDICLNTIENFNIHALNLKS 220

Query: 235 XXXXXXXHGRPCG--KIVVLAPKLCNYTSHG---MFSIAFEVSELECVYVKSHSCKRMMY 399
                  + R     K+++ APKL ++   G   +F     ++ L+ V V      +  Y
Sbjct: 221 LEILNWRYSRIMRGCKVMLFAPKLTSFKFDGNTPLFWSEVNLTSLDDVNV----VLQRYY 276

Query: 400 LRDNLEKYYQQ-----------------FTRMFPGLGMAKSITFDRNSIKALSQISNHLA 528
            R + + Y  +                   +M      AKS+T   N I+ LS++   L 
Sbjct: 277 YRHDYQFYVDEDEYISGEDETKQGFCLDLLKMLHQFCSAKSLTLSMNIIEVLSKVPAALN 336

Query: 529 KHHSPFYNLKYAKLPQGYKESSMPSALKSYLLSGS 633
           KH SPF NLKY KL   +K+ ++P+ + +Y LS S
Sbjct: 337 KHPSPFSNLKYLKLKTDHKDVTLPAHVLNYFLSSS 371


>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
           gi|222873903|gb|EEF11034.1| f-box family protein
           [Populus trichocarpa]
          Length = 453

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 21/211 (9%)
 Frame = +1

Query: 55  LPETMWNLPALLTLELNDVELPENITDIFSALVNLQTLTLCFVSVYLQQELVISCPXXXX 234
           LP+++  L +L TL L   +  +    IFS+  NL+ LT+  + + + +   I       
Sbjct: 183 LPKSL-GLQSLKTLHLGGAQNFDG--KIFSSCPNLENLTIEDICLNVIENFNIHALSLKS 239

Query: 235 XXXXXXXHGR---PCGKIVVLAPKLCNYTSHG---MFSIAFEVSELECVYVK----SHSC 384
                  + R    C K++++APKL ++   G   +F     ++ L+ V V      HS 
Sbjct: 240 LEILNWRYNRIKQGC-KVMLVAPKLTSFKFDGNTPLFWSDVNLTSLDDVNVVLQRYHHSH 298

Query: 385 KRMMYLRDNLEKYYQQFTRMFPGLGM-----------AKSITFDRNSIKALSQISNHLAK 531
               Y+ +  ++Y  +      GLG+           AKS+T   N I+ LS++   L K
Sbjct: 299 NYPFYVVE--DEYISEEDETEQGLGLNLIKMLHQFCSAKSLTLSMNIIEILSEVPAALDK 356

Query: 532 HHSPFYNLKYAKLPQGYKESSMPSALKSYLL 624
           H SPF NLKY KL   +K+ ++P+ + +Y L
Sbjct: 357 HPSPFSNLKYLKLKTDHKDVTLPAHVLNYFL 387


>ref|XP_002331319.1| f-box family protein [Populus trichocarpa]
           gi|222873902|gb|EEF11033.1| f-box family protein
           [Populus trichocarpa]
          Length = 453

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 20/210 (9%)
 Frame = +1

Query: 55  LPETMWNLPALLTLELNDVELPENITDIFSALVNLQTLTLCFVSVYLQQELVISCPXXXX 234
           LP+++  L +L TL L      +    IFS   NL+ L +  + +   +   I       
Sbjct: 183 LPKSL-GLQSLKTLHLGGARNFDG--KIFSTCPNLENLKIEDIYLNTIENFNIHALNLKS 239

Query: 235 XXXXXXXHGRPCG--KIVVLAPKLCNYTSHG---MFSIAFEVSELECVYVK----SHSCK 387
                  +GR     K+++ APKL ++  +G   +F     ++ L+ V V      HS  
Sbjct: 240 LEILNWRYGRIMRGCKVMLFAPKLTSFKFYGNTPLFWSEVNLTSLDDVNVVLQRYQHSHN 299

Query: 388 RMMYLRDNLEKYYQQFTRMFPGLGM-----------AKSITFDRNSIKALSQISNHLAKH 534
              Y+ +  ++Y  +      GLG+           AKS+T   N I+ LS++   L KH
Sbjct: 300 YPFYVVE--DEYISEEDETEQGLGLNLIKMLHQFCSAKSLTLSMNIIEILSEVPAALDKH 357

Query: 535 HSPFYNLKYAKLPQGYKESSMPSALKSYLL 624
            SPF NLKY KL   +K+ ++P+ + +Y L
Sbjct: 358 PSPFSNLKYLKLKTDHKDVTLPAHVLNYFL 387


Top