BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00031454
         (379 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    65   6e-09
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              59   5e-07
ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcript...    55   5e-06
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    55   8e-06

>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
 Frame = -3

Query: 377 MLQFGLNVHPMCILCGSNEESASHLFVSCPFSAYIMNECPVTLACNWSDYLNGNFVVGHV 198
           M  + + V   CILC    ES  HLF SCPF+  I      T+  N   Y +   ++ +V
Sbjct: 336 MTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTI-YNTCFYTDWQTIINNV 394

Query: 197 TQVW--KQLGFL---FFGIAVHSIWKERNQRLHRTNPNTGGKPVSKLLTEIKNTVRA 42
           ++ W  +  GFL      + ++++W+ERN+R H  +PN+  + +S +   I+N + A
Sbjct: 395 SRNWPDRIAGFLARCILQVTIYTLWRERNERKHGASPNSSSRLISWIDKHIRNHLMA 451


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
 Frame = -3

Query: 377 MLQFGLNVHPMCILCGSNEESASHLFVSCPFSAYI-----MNECPVTLACNWSDYLNGNF 213
           MLQ+   + P C+LC +N E+ +HLF SC ++A I      N      + NWS  L    
Sbjct: 517 MLQWNRRLSPTCVLCNNNIETRNHLFFSCCYTAEIWENLAKNIYKAKFSTNWSTILTS-- 574

Query: 212 VVGHVTQVWKQ-----LGFLFFGIAVHSIWKERNQRLHRTNPNTGGKPVSKLLTEIKNTV 48
               V+  W+      L    F   +H+IW ERN R H    N+    +  L  +++N +
Sbjct: 575 ----VSTTWRNRTESFLARYIFQATIHTIWHERNGRRHGERSNSATHLIWWLDKQMRNQI 630


>ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana] gi|3184287|gb|AAC18934.1|
           putative non-LTR retroelement reverse transcriptase
           [Arabidopsis thaliana] gi|330250497|gb|AEC05591.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein [Arabidopsis
           thaliana]
          Length = 211

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
 Frame = -3

Query: 377 MLQFGLNVHPMCILCGSNEESASHLFVSCPFSAYI-------MNECPVTLACNWSDYLNG 219
           M+ +G    P+C+ C +++E+  HLF  C F+  +       ++  P  L  +   +L  
Sbjct: 74  MISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFTSRVHVFPPLLFEDGIRWLKN 133

Query: 218 NFVVGHVTQVWKQLGFLFFGIAVHSIWKERNQRLHRTNPNTGGKPVSKLLTEIKNTVRAK 39
                +VT + +    L    +V++IWKERN RLH    ++  +P + L+ EIK+ +R  
Sbjct: 134 PCQDKNVTTILR----LSHHASVYTIWKERNARLH----DSASRPAAALILEIKSVIRCH 185

Query: 38  L 36
           L
Sbjct: 186 L 186


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
 Frame = -3

Query: 377  MLQFGLNVHPMCILCGSNEESASHLFVSCPFSAYIMNECPVTLACNWSDYLNGNFVVGHV 198
            ML +   +   C+LC +  ES  HLF SC FS+ +  E         S   +   ++  +
Sbjct: 1313 MLLWNRGLQGTCLLCRNATESRDHLFFSCSFSSEVW-EMSAKSIYKSSYSTDWRHLLTKI 1371

Query: 197  TQVWKQ-----LGFLFFGIAVHSIWKERNQRLHRTNPNTGGKPVSKLLTEIKNTVRA 42
             + WK      +    F ++V++IW+ERN+R H  NPN   + V  +  +I++ + A
Sbjct: 1372 QENWKDRVESFIARYIFQVSVYAIWRERNRRKHGRNPNQAAQLVRWIDKQIRDQLSA 1428