BLASTX nr result
ID: Bupleurum21_contig00031382
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00031382
(860 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003623623.1| Pentatricopeptide repeat-containing protein ... 115 9e-29
ref|XP_002323670.1| predicted protein [Populus trichocarpa] gi|2... 124 4e-26
gb|ABR16388.1| unknown [Picea sitchensis] 64 6e-12
ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containi... 48 1e-10
gb|ACG44675.1| hypothetical protein [Zea mays] 71 3e-10
>ref|XP_003623623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498638|gb|AES79841.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 583
Score = 115 bits (288), Expect(2) = 9e-29
Identities = 54/103 (52%), Positives = 72/103 (69%)
Frame = -1
Query: 860 LEGIGLLNQMKKRNCIPDYITYSTILHGLLKWSEIHSAFTIYKEMCSLGFEVDERMMNTL 681
+EG+G+L MK+ C+ D I Y T+LHGLLKW+E AF +YKEM +GFEVD RMM TL
Sbjct: 303 MEGVGVLKMMKEHGCVADLINYKTVLHGLLKWNETVEAFGVYKEMVRIGFEVDSRMMGTL 362
Query: 680 LRGLCRRSRMERDLLGNAYEVFDRMKSRGYVIYPCAYELAIEA 552
+R LC+ S E+ LL +A EVF++MK RG V+ E+ +EA
Sbjct: 363 VRRLCKLSWREKGLLEDACEVFEKMKERGLVVDKRTVEVMVEA 405
Score = 38.1 bits (87), Expect(2) = 9e-29
Identities = 27/95 (28%), Positives = 42/95 (44%)
Frame = -2
Query: 553 QALCKGKQMDRALATLHEMIRYGHSPRMITVTNVIRPPYVHIDPTKALLILFSMRKQSTM 374
+AL +G++ D AL L++M+R+G+S I VI +A+ L ++
Sbjct: 404 EALFRGEKFDEALVNLNDMVRWGYSLEGIAFEEVIEGLCGQGRVDEAVSTLLLLQANGGF 463
Query: 373 AIAFPFDMFINEGNQQGXXXXXXXXXXXALKRGVV 269
F + +NE N G ALK GVV
Sbjct: 464 LDRVSFGVLVNELNAHGRVFCASFLFGVALKHGVV 498
>ref|XP_002323670.1| predicted protein [Populus trichocarpa] gi|222868300|gb|EEF05431.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 124 bits (310), Expect = 4e-26
Identities = 59/111 (53%), Positives = 78/111 (70%)
Frame = -1
Query: 860 LEGIGLLNQMKKRNCIPDYITYSTILHGLLKWSEIHSAFTIYKEMCSLGFEVDERMMNTL 681
L+G G+L MK+R C+PDYI+YST+LHGLL W ++ + I+ EM G E DER+MN+L
Sbjct: 333 LKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLAGLRIFNEMEGSGLEADERLMNSL 392
Query: 680 LRGLCRRSRMERDLLGNAYEVFDRMKSRGYVIYPCAYELAIEASLVQGKTD 528
+RGLCR+S E DL+ AYEVF++MK RG+VI Y L I+A V K D
Sbjct: 393 VRGLCRKSIKENDLVEVAYEVFEKMKKRGFVIEQSTYALVIQALWVAKKVD 443
Score = 62.4 bits (150), Expect = 1e-07
Identities = 37/101 (36%), Positives = 54/101 (53%)
Frame = -2
Query: 553 QALCKGKQMDRALATLHEMIRYGHSPRMITVTNVIRPPYVHIDPTKALLILFSMRKQSTM 374
QAL K++D A LH+M+R G+ PR+IT+ NVI+ V KA +L M + S +
Sbjct: 434 QALWVAKKVDDAFINLHQMVRLGYIPRLITINNVIQALCVGGKVDKAFYVLVLMYENSKI 493
Query: 373 AIAFPFDMFINEGNQQGXXXXXXXXXXXALKRGVVQQKRPK 251
+D+ I+E N+Q AL RGVV K+P+
Sbjct: 494 PSRMSYDLLIHELNRQERTLGACNVYGAALVRGVVPHKKPR 534
>gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 63.9 bits (154), Expect(2) = 6e-12
Identities = 33/111 (29%), Positives = 62/111 (55%)
Frame = -1
Query: 860 LEGIGLLNQMKKRNCIPDYITYSTILHGLLKWSEIHSAFTIYKEMCSLGFEVDERMMNTL 681
+E + +L +M + +C PD++TY+T++ GL++ +++ A ++ EM + G++V+ +N L
Sbjct: 480 IEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNIL 539
Query: 680 LRGLCRRSRMERDLLGNAYEVFDRMKSRGYVIYPCAYELAIEASLVQGKTD 528
RGL R + +A + RMK RG+ Y LAI G+ +
Sbjct: 540 ARGLARVGNHK-----DASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEME 585
Score = 33.1 bits (74), Expect(2) = 6e-12
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = -2
Query: 532 QMDRALATLHEMIRYGHSPRMITVTNVIRP--PYVHIDPTKALLILFSMRKQSTMAIAFP 359
+M+ A A L+EMI G+SP + T +I+ +D A+L M +
Sbjct: 583 EMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNF--MIENGIGPDTGS 640
Query: 358 FDMFINEGNQQGXXXXXXXXXXXALKRGVVQQKRP 254
+++ I E + QG AL+RGVV +P
Sbjct: 641 YNILIKEFHNQGRTQDADQLYATALERGVVLNPKP 675
>ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 48.1 bits (113), Expect(2) = 1e-10
Identities = 25/104 (24%), Positives = 47/104 (45%)
Frame = -1
Query: 845 LLNQMKKRNCIPDYITYSTILHGLLKWSEIHSAFTIYKEMCSLGFEVDERMMNTLLRGLC 666
+ +M++R+C + +TY+ ++ GL + + AF +EM G D L+ GLC
Sbjct: 267 VFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLC 326
Query: 665 RRSRMERDLLGNAYEVFDRMKSRGYVIYPCAYELAIEASLVQGK 534
+ R++ A + D M G Y ++ + +GK
Sbjct: 327 KGGRLK-----EAKALLDEMSCSGLKPNVVVYATLVDGFMKEGK 365
Score = 44.3 bits (103), Expect(2) = 1e-10
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = -2
Query: 559 LKQALCKGKQMDRALATLHEMIRYGHSPRMITVTNVIRPPYVHIDPTKALLILFSMRKQS 380
L + LCK Q+ RA L+EMI+ GH P T +++ + H D A +L MR
Sbjct: 391 LIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSG 450
Query: 379 TMAIAFPFDMFINEGNQQG 323
+ A+ + + IN Q G
Sbjct: 451 ILPNAYTYGIMINGLCQNG 469
>gb|ACG44675.1| hypothetical protein [Zea mays]
Length = 558
Score = 71.2 bits (173), Expect = 3e-10
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Frame = -1
Query: 860 LEGIGLLNQMKKRN---CIPDYITYSTILHGLLKWSEIHSAFTIYKEMCSLGFEVDERMM 690
L+ LL +M N C+PD ++ +L LL+ E +A+ YK M GFEVD R +
Sbjct: 334 LKAFALLMEMCGNNDAACLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRAL 393
Query: 689 NTLLRGLCRRSRMERDLLGNAYEVFDRMKSRGYVIYPCAYELAIEASLVQGKTD 528
+TL RGLCRR + LG+A EVF ++ + G+ Y L +A G+ D
Sbjct: 394 DTLARGLCRRCATDASALGDAEEVFGKVVASGHEPVSYTYCLMAQALARGGEVD 447