BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00031232
         (769 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   323   2e-86
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...   318   1e-84
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar...   310   3e-82
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,...   305   9e-81
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   299   5e-79

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  323 bits (828), Expect = 2e-86
 Identities = 161/230 (70%), Positives = 183/230 (79%), Gaps = 3/230 (1%)
 Frame = -3

Query: 683 DKQSHTPLLNKPNSIWVNPINTTPSVLTLQRHKRSSSSFSPHIKHLRCL---INSLNISA 513
           D    T L++KP S W+NP    PSVL+LQRHKR + S++P I+ L+     IN    S 
Sbjct: 90  DHSGQTHLVSKPKSTWINPTKPKPSVLSLQRHKRHNYSYNPQIRDLKLFAKKINESESSD 149

Query: 512 QSHFFQILENYPCSITRDDALLVLNSLKSWQKTLLFFNWIKTKNLFQGETIYYNVTMKSL 333
           +S F  +LE  P   TRD+ALL+LNSLK W KT LFFNWIKT+NLF  ETI+YNVTMKSL
Sbjct: 150 ESEFLAVLEQIPHPPTRDNALLLLNSLKPWPKTYLFFNWIKTQNLFPMETIFYNVTMKSL 209

Query: 332 RFGRQFQHIENLALEMIQNGVELDNITYSTIITCAKRCNLFDKAVEWFERMYKTGLMPDE 153
           RFGRQFQ IE LA EMI  GVELDNITYSTIITCAKRCNLFDKAV+WFERMYKTGLMPDE
Sbjct: 210 RFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDE 269

Query: 152 VTYSAVLDVYGKLRRVEEVISLYKRGRASGWKPDSIAFAVLGKLFAQAGD 3
           VTYSA+LDVY KL +VEEV+SLY+RGRASGWKPD IAFAVLGK+F +AGD
Sbjct: 270 VTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGD 319



 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 33/121 (27%), Positives = 59/121 (48%)
 Frame = -3

Query: 368 ETIYYNVTMKSLRFGRQFQHIENLALEMIQNGVELDNITYSTIITCAKRCNLFDKAVEWF 189
           + I + V  K       +  I  +  EM   GV+ + + Y+T++    +      A   F
Sbjct: 303 DPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 362

Query: 188 ERMYKTGLMPDEVTYSAVLDVYGKLRRVEEVISLYKRGRASGWKPDSIAFAVLGKLFAQA 9
           E M  +G++PD  T +A++ +YGK R   + + L++R R++GW  D I +  L  + A  
Sbjct: 363 EEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADL 422

Query: 8   G 6
           G
Sbjct: 423 G 423


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309232|gb|EFH39656.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 711

 Score =  318 bits (814), Expect = 1e-84
 Identities = 153/229 (66%), Positives = 186/229 (81%), Gaps = 3/229 (1%)
 Frame = -3

Query: 680 KQSHTPLLNKPNSIWVNPINTTPSVLTLQRHKRSSSSFSPHIKHLRCL---INSLNISAQ 510
           +Q  T +L+KP S+WVNP     SVL+LQR KRS+ S++P IK LR     +NS N + +
Sbjct: 78  RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFAQKLNSSNFTEK 137

Query: 509 SHFFQILENYPCSITRDDALLVLNSLKSWQKTLLFFNWIKTKNLFQGETIYYNVTMKSLR 330
           S F  +L+  P    RD+ALLVLNSL+ WQKT  FFNW+K+KNLF  ETI+YNVTMKSLR
Sbjct: 138 SEFLSLLDEIPHPPDRDNALLVLNSLREWQKTHTFFNWVKSKNLFPMETIFYNVTMKSLR 197

Query: 329 FGRQFQHIENLALEMIQNGVELDNITYSTIITCAKRCNLFDKAVEWFERMYKTGLMPDEV 150
           FGRQF  IE +ALEM+++GVELDNITYSTIITCAKRCN +DKA+EWFERMYKTGLMPDEV
Sbjct: 198 FGRQFYLIEEMALEMVKDGVELDNITYSTIITCAKRCNFYDKAIEWFERMYKTGLMPDEV 257

Query: 149 TYSAVLDVYGKLRRVEEVISLYKRGRASGWKPDSIAFAVLGKLFAQAGD 3
           TYSA+LDVY KLR+VEEV+SLY+R  A+GWKPD+IAF+VLGK+F +AGD
Sbjct: 258 TYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGD 306


>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
           gi|8885599|dbj|BAA97529.1| unnamed protein product
           [Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 711

 Score =  310 bits (793), Expect = 3e-82
 Identities = 151/229 (65%), Positives = 184/229 (80%), Gaps = 3/229 (1%)
 Frame = -3

Query: 680 KQSHTPLLNKPNSIWVNPINTTPSVLTLQRHKRSSSSFSPHIKHLRCLINSLNISA---Q 510
           +Q  T +L+KP S+WVNP     SVL+LQR KRS+ S++P IK LR     LN S    +
Sbjct: 78  RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEK 137

Query: 509 SHFFQILENYPCSITRDDALLVLNSLKSWQKTLLFFNWIKTKNLFQGETIYYNVTMKSLR 330
           S F  +L+  P    RD+ALLVLNSL+ WQKT  FFNW+K+K+LF  ETI+YNVTMKSLR
Sbjct: 138 SEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLR 197

Query: 329 FGRQFQHIENLALEMIQNGVELDNITYSTIITCAKRCNLFDKAVEWFERMYKTGLMPDEV 150
           FGRQFQ IE +ALEM+++GVELDNITYSTIITCAKRCNL++KA+EWFERMYKTGLMPDEV
Sbjct: 198 FGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEV 257

Query: 149 TYSAVLDVYGKLRRVEEVISLYKRGRASGWKPDSIAFAVLGKLFAQAGD 3
           TYSA+LDVY K  +VEEV+SLY+R  A+GWKPD+IAF+VLGK+F +AGD
Sbjct: 258 TYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGD 306


>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 677

 Score =  305 bits (780), Expect = 9e-81
 Identities = 153/239 (64%), Positives = 180/239 (75%), Gaps = 2/239 (0%)
 Frame = -3

Query: 713 SSTPVFANSPDKQSHTPLLNKPNSIWVNPINTTPSVLTLQRHKRSSSSFSPHIKHLRCLI 534
           SST +   +    +   LL+KPNS WVNP     SVL+LQR KRS  S +P +K LR   
Sbjct: 79  SSTTLSTTTTTTTTKHSLLSKPNSTWVNPTKPKRSVLSLQRQKRSPYSLNPKVKELRLFA 138

Query: 533 NSLNI--SAQSHFFQILENYPCSITRDDALLVLNSLKSWQKTLLFFNWIKTKNLFQGETI 360
             LN   S +S F  +LE  P  +TR++ALL+LNSL+ WQK  LFFNWIKT+N F  ETI
Sbjct: 139 QKLNDCDSTESSFLSLLEQIPYPLTRENALLILNSLRPWQKAHLFFNWIKTQNSFPVETI 198

Query: 359 YYNVTMKSLRFGRQFQHIENLALEMIQNGVELDNITYSTIITCAKRCNLFDKAVEWFERM 180
           +YNVTMKSLRFGRQF+ I+ LA EM+ N +ELDNITYSTIITCAKRCN FD A+EWFERM
Sbjct: 199 FYNVTMKSLRFGRQFELIDKLANEMVSNEIELDNITYSTIITCAKRCNRFDMALEWFERM 258

Query: 179 YKTGLMPDEVTYSAVLDVYGKLRRVEEVISLYKRGRASGWKPDSIAFAVLGKLFAQAGD 3
           YKTGLMPDEVTYSA+LDVY KL RVEEV+SLY+RG ASGWKPD I F+VL K+F +AGD
Sbjct: 259 YKTGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKPDPITFSVLAKMFGEAGD 317


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
           gi|449521148|ref|XP_004167592.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  299 bits (765), Expect = 5e-79
 Identities = 150/239 (62%), Positives = 184/239 (76%), Gaps = 3/239 (1%)
 Frame = -3

Query: 710 STPVFANSPDKQSHTPLLNKPNSIWVNPINTTPSVLTLQRHKRSSSSFSPHIKHLRCLIN 531
           ST   +N+P+ +  T LL+KP S WVNP     SVL+LQR KRSS S++P ++ L+   +
Sbjct: 69  STTTLSNAPNDE--TRLLSKPKSTWVNPTKPKRSVLSLQRQKRSSYSYNPKMRDLKSFAH 126

Query: 530 SLNI---SAQSHFFQILENYPCSITRDDALLVLNSLKSWQKTLLFFNWIKTKNLFQGETI 360
            LN    S  + F   LE  P   T+++ALL+LNSL+ WQKT LFFNWIK++NLF  ETI
Sbjct: 127 KLNACDSSDDASFIAALEEIPHPPTKENALLILNSLRPWQKTHLFFNWIKSQNLFPMETI 186

Query: 359 YYNVTMKSLRFGRQFQHIENLALEMIQNGVELDNITYSTIITCAKRCNLFDKAVEWFERM 180
           +YNV MKSLR+GRQFQ IE+LA EMI  G+ELDNITYSTIITCAK+C+ FDKA+EWFERM
Sbjct: 187 FYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTIITCAKKCSRFDKAMEWFERM 246

Query: 179 YKTGLMPDEVTYSAVLDVYGKLRRVEEVISLYKRGRASGWKPDSIAFAVLGKLFAQAGD 3
           YKTGLMPDEVTYSA+LDVY  L +VEEV+SLY+RGRASGW PD   F+VLGK+F +AGD
Sbjct: 247 YKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGD 305