BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00031192
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containi...   241   6e-62
ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containi...   240   1e-61
ref|XP_002510791.1| pentatricopeptide repeat-containing protein,...   239   2e-61
emb|CBI22748.3| unnamed protein product [Vitis vinifera]              231   4e-59
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi...   231   4e-59

>ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like isoform 1 [Glycine max]
           gi|356575967|ref|XP_003556107.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g60050-like isoform 2 [Glycine max]
          Length = 480

 Score =  241 bits (614), Expect = 6e-62
 Identities = 116/156 (74%), Positives = 131/156 (83%), Gaps = 1/156 (0%)
 Frame = +2

Query: 5   GCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKLI 184
           G P TARTFNI+I TC +AG+A+  VE+FIKSK F FRPFKH YNAIL  LL +NQYKLI
Sbjct: 186 GLPATARTFNILIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLI 245

Query: 185 EWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILHV 364
           EWVYQQML++G   DILTYN+VM AKYRLGK D FH LLDEM RNG SPDFHT+NI+LHV
Sbjct: 246 EWVYQQMLLDGFPSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHV 305

Query: 365 LGRGDKPEAAFNLLNHMKEIGVEPTV-HITTLIDGL 469
           LG+GDKP AA NLLNHM+E+G+EPTV H TTLIDGL
Sbjct: 306 LGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGL 341


>ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like [Glycine max]
          Length = 480

 Score =  240 bits (612), Expect = 1e-61
 Identities = 115/156 (73%), Positives = 131/156 (83%), Gaps = 1/156 (0%)
 Frame = +2

Query: 5   GCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKLI 184
           G P TARTFNI+I TC +AG+A+  VE+FIKSK F FRPFKH YNAIL  LL +NQYKLI
Sbjct: 186 GLPATARTFNILIRTCGEAGLAKSLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLI 245

Query: 185 EWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILHV 364
           EWVYQQ+L++G   DILTYN+VM AKYRLGK D FH LLDEM RNG SPDFHT+NI+LHV
Sbjct: 246 EWVYQQLLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHV 305

Query: 365 LGRGDKPEAAFNLLNHMKEIGVEPTV-HITTLIDGL 469
           LG+GDKP AA NLLNHM+E+G+EPTV H TTLIDGL
Sbjct: 306 LGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGL 341


>ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549906|gb|EEF51393.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 475

 Score =  239 bits (609), Expect = 2e-61
 Identities = 114/156 (73%), Positives = 131/156 (83%), Gaps = 1/156 (0%)
 Frame = +2

Query: 5   GCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKLI 184
           G PTTARTFNI+ICTC  AG+ARK VE+FIKSK F +RPFKH YNAIL SLL + +YKLI
Sbjct: 184 GFPTTARTFNILICTCGGAGLARKVVERFIKSKTFNYRPFKHSYNAILLSLLAIREYKLI 243

Query: 185 EWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILHV 364
           EWV+QQMLVEG+ PD LTYN++M AKYRLGK   FH LLDEM R+G SPDFHTYNI+LHV
Sbjct: 244 EWVHQQMLVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSPDFHTYNILLHV 303

Query: 365 LGRGDKPEAAFNLLNHMKEIGVEPTV-HITTLIDGL 469
           LG+G+KP AA  LLNHMKEIG +P++ H TTLIDGL
Sbjct: 304 LGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGL 339



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 36/142 (25%), Positives = 62/142 (43%)
 Frame = +2

Query: 2   IGCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKL 181
           IG   +   F  +I   S+AG        F +  K  F P   CY  ++   +   + + 
Sbjct: 323 IGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCYTVMITGYIVAGELEK 382

Query: 182 IEWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILH 361
              ++ +M+  G  P++ TYN ++      GKF++   +L EM   G  P+F  YN +++
Sbjct: 383 AREIFDEMIARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVN 442

Query: 362 VLGRGDKPEAAFNLLNHMKEIG 427
            L    K   A  ++  M E G
Sbjct: 443 NLRNAGKLSEAREVIKEMAENG 464


>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  231 bits (590), Expect = 4e-59
 Identities = 107/156 (68%), Positives = 130/156 (83%), Gaps = 1/156 (0%)
 Frame = +2

Query: 5   GCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKLI 184
           G P TARTF I+ICTC +AG+AR+AVE+F+KSK F +RPFKH YNAIL  LL + QYKL+
Sbjct: 223 GFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLV 282

Query: 185 EWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILHV 364
           EWVYQQML+E + PDILTYN+VM  KYRLGK D FH LL+E+  NG SPDFHT+NI+LH+
Sbjct: 283 EWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHL 342

Query: 365 LGRGDKPEAAFNLLNHMKEIGVEPTV-HITTLIDGL 469
           LG+G+KP AA +LLNHMKE+G +P+V H TTLIDGL
Sbjct: 343 LGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGL 378



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 37/155 (23%), Positives = 71/155 (45%)
 Frame = +2

Query: 2   IGCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKL 181
           +G   +   F  +I   S+AG        F +  K    P   CY  ++   +   + ++
Sbjct: 362 VGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEM 421

Query: 182 IEWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILH 361
            + ++++M V+G  P++ TYN ++       KF++   +L EM   G +P+F  YN ++ 
Sbjct: 422 AQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVG 481

Query: 362 VLGRGDKPEAAFNLLNHMKEIGVEPTVHITTLIDG 466
            L    K + A  ++ HM + G    VH+ +   G
Sbjct: 482 NLRNAGKLKEAHEVIRHMVDKG--QYVHLLSKFKG 514



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
 Frame = +2

Query: 26  TFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKLIEWVYQQM 205
           TFNI++    +      A++     K+  F P    +  ++  L         ++ + +M
Sbjct: 335 TFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEM 394

Query: 206 LVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILHVLGRGDKP 385
           +  G  PD++ Y V+++     G+ +   GL +EM   G  P+  TYN ++  L   +K 
Sbjct: 395 IKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKF 454

Query: 386 EAAFNLLNHMKEIGVEPTVHI-TTLIDGL 469
           E A ++L  M+  G  P   +  TL+  L
Sbjct: 455 EEARSMLKEMESRGCNPNFLVYNTLVGNL 483


>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  231 bits (590), Expect = 4e-59
 Identities = 107/156 (68%), Positives = 130/156 (83%), Gaps = 1/156 (0%)
 Frame = +2

Query: 5   GCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKLI 184
           G P TARTF I+ICTC +AG+AR+AVE+F+KSK F +RPFKH YNAIL  LL + QYKL+
Sbjct: 219 GFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLV 278

Query: 185 EWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILHV 364
           EWVYQQML+E + PDILTYN+VM  KYRLGK D FH LL+E+  NG SPDFHT+NI+LH+
Sbjct: 279 EWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHL 338

Query: 365 LGRGDKPEAAFNLLNHMKEIGVEPTV-HITTLIDGL 469
           LG+G+KP AA +LLNHMKE+G +P+V H TTLIDGL
Sbjct: 339 LGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGL 374



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 37/155 (23%), Positives = 71/155 (45%)
 Frame = +2

Query: 2   IGCPTTARTFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKL 181
           +G   +   F  +I   S+AG        F +  K    P   CY  ++   +   + ++
Sbjct: 358 VGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEM 417

Query: 182 IEWVYQQMLVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILH 361
            + ++++M V+G  P++ TYN ++       KF++   +L EM   G +P+F  YN ++ 
Sbjct: 418 AQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVG 477

Query: 362 VLGRGDKPEAAFNLLNHMKEIGVEPTVHITTLIDG 466
            L    K + A  ++ HM + G    VH+ +   G
Sbjct: 478 NLRNAGKLKEAHEVIRHMVDKG--QYVHLLSKFKG 510



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
 Frame = +2

Query: 26  TFNIVICTCSQAGVARKAVEKFIKSKKFYFRPFKHCYNAILCSLLTVNQYKLIEWVYQQM 205
           TFNI++    +      A++     K+  F P    +  ++  L         ++ + +M
Sbjct: 331 TFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEM 390

Query: 206 LVEGHRPDILTYNVVMSAKYRLGKFDDFHGLLDEMARNGLSPDFHTYNIILHVLGRGDKP 385
           +  G  PD++ Y V+++     G+ +   GL +EM   G  P+  TYN ++  L   +K 
Sbjct: 391 IKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKF 450

Query: 386 EAAFNLLNHMKEIGVEPTVHI-TTLIDGL 469
           E A ++L  M+  G  P   +  TL+  L
Sbjct: 451 EEARSMLKEMESRGCNPNFLVYNTLVGNL 479