BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00031173
         (712 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   258   1e-66
gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]        255   7e-66
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2...   249   3e-64
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   241   8e-62
emb|CBI31781.3| unnamed protein product [Vitis vinifera]              236   3e-60

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  258 bits (658), Expect = 1e-66
 Identities = 145/239 (60%), Positives = 169/239 (70%), Gaps = 2/239 (0%)
 Frame = -1

Query: 712 GEFNDNFMRXXXXXXXXXXXXXXXXXXXXXSKQTEKLLLAYAGPTSNVRVEHTTIDSFNQ 533
           GEFNDNFMR                     SKQTEKLLLAYAGP SNVRVE T+ D F+ 
Sbjct: 284 GEFNDNFMRAGLEAVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSD 343

Query: 532 VSAFAEVKSLYDKKSESQVIRNCHE-EETEVKIHATAHMAMEGVMAMSDLVVQALALTIR 356
             A AEV SLY+  SE+   R  H+ + TEV       +A+EG+M+M DL VQALALTIR
Sbjct: 344 GGALAEVMSLYENLSENS--RADHQVDNTEVMEQENHCLAIEGIMSMPDLAVQALALTIR 401

Query: 355 YLKQFGFENILCSGASFRPLSSSMEMTLSANAMQQLEVLKNNFDGTEHGSLLQCMNNTLT 176
           +LKQFG E ILC GASFRP SS+MEMTLSANA+QQLEVL N+ DG+E GSLL  MN+TLT
Sbjct: 402 HLKQFGLERILCMGASFRPFSSNMEMTLSANALQQLEVLNNHSDGSESGSLLHTMNHTLT 461

Query: 175 ISGSRVLKHWVTHPLCDRNMIHSRLDAVSEIAESMGSHKASED-PKFDEGSFDITIVRP 2
           I GSR+L+HWV+HPLCD NMI +RLDAVSEI  SMGS KAS++    DEG  D+T V+P
Sbjct: 462 IFGSRLLRHWVSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQP 520


>gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]
          Length = 846

 Score =  255 bits (651), Expect = 7e-66
 Identities = 140/237 (59%), Positives = 169/237 (71%)
 Frame = -1

Query: 712 GEFNDNFMRXXXXXXXXXXXXXXXXXXXXXSKQTEKLLLAYAGPTSNVRVEHTTIDSFNQ 533
           GEFNDNFMR                     SKQTEKLLLAYAGP SNVRVE  + D F+ 
Sbjct: 19  GEFNDNFMRAGLEAMILDLLPAELLVGRPISKQTEKLLLAYAGPASNVRVEDVSSDRFSD 78

Query: 532 VSAFAEVKSLYDKKSESQVIRNCHEEETEVKIHATAHMAMEGVMAMSDLVVQALALTIRY 353
             A +EV SLY+   E+ ++     EE EVK+H     A++G++AM DL VQALAL IR+
Sbjct: 79  GGALSEVMSLYEGVRENYLLNVHEREEAEVKMHEQNQSAIQGILAMPDLAVQALALIIRH 138

Query: 352 LKQFGFENILCSGASFRPLSSSMEMTLSANAMQQLEVLKNNFDGTEHGSLLQCMNNTLTI 173
           LKQFG E +LC GASFRP SS+MEMTLSANA+QQLEVLKNNFDG+E GSL+ CMN TLT+
Sbjct: 139 LKQFGMERVLCLGASFRPFSSNMEMTLSANALQQLEVLKNNFDGSESGSLMHCMNQTLTV 198

Query: 172 SGSRVLKHWVTHPLCDRNMIHSRLDAVSEIAESMGSHKASEDPKFDEGSFDITIVRP 2
            GSR+L+HWVTHPL DRNMI +RLDAV+EIA+SM + + S D K  EG+ D+TI +P
Sbjct: 199 FGSRLLRHWVTHPLRDRNMIDARLDAVAEIADSMKTCQTS-DLKV-EGA-DVTISQP 252


>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
           predicted protein [Populus trichocarpa]
          Length = 1092

 Score =  249 bits (637), Expect = 3e-64
 Identities = 134/238 (56%), Positives = 166/238 (69%), Gaps = 1/238 (0%)
 Frame = -1

Query: 712 GEFNDNFMRXXXXXXXXXXXXXXXXXXXXXSKQTEKLLLAYAGPTSNVRVEHTTIDSFNQ 533
           GEFND FMR                     SKQTEKLLLAY+GP+SNVRVE  + D F+ 
Sbjct: 259 GEFNDGFMRSGLEAFVLSLAPAELLLGDPLSKQTEKLLLAYSGPSSNVRVERVSRDCFSD 318

Query: 532 VSAFAEVKSLYDKKSESQVIRNCHEEETEVKIHATAHMAMEGVMAMSDLVVQALALTIRY 353
             A A+V SLY+   E  +  N  ++ T+ K   + H+A+EGV+ M DL V+ALALT+R+
Sbjct: 319 GGALADVMSLYENMIEDNLGDN-EKQMTDAKEQGSCHLAIEGVIKMPDLAVEALALTVRH 377

Query: 352 LKQFGFENILCSGASFRPLSSSMEMTLSANAMQQLEVLKNNFDGTEHGSLLQCMNNTLTI 173
           LKQFGF+ +LC GASFRP SS+MEM LSAN +QQLEVL+NN DG+E GSLL  MN+TLTI
Sbjct: 378 LKQFGFDRMLCLGASFRPFSSNMEMNLSANTLQQLEVLRNNSDGSESGSLLHIMNHTLTI 437

Query: 172 SGSRVLKHWVTHPLCDRNMIHSRLDAVSEIAESMGSHKASED-PKFDEGSFDITIVRP 2
            GSR+L+HWVTHPLCDRNMI +RLDAVSEIAE MG  K S+   + DE   ++ IV+P
Sbjct: 438 YGSRLLRHWVTHPLCDRNMISARLDAVSEIAECMGFSKDSQRVSELDEDDSEVAIVQP 495


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
           gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
           MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  241 bits (616), Expect = 8e-62
 Identities = 134/245 (54%), Positives = 168/245 (68%), Gaps = 8/245 (3%)
 Frame = -1

Query: 712 GEFNDNFMRXXXXXXXXXXXXXXXXXXXXXSKQTEKLLLAYAGPTSNVRVEHTTIDSFNQ 533
           GEFND F+R                     SKQTEKLLLAYAGP+SNVRVE  +   FN 
Sbjct: 275 GEFNDGFLRSGLEAVVLSLMPAELLLGDPLSKQTEKLLLAYAGPSSNVRVERASGHHFND 334

Query: 532 VSAFAEVKSLYD-------KKSESQVIRNCHEEETEVKIHATAHMAMEGVMAMSDLVVQA 374
             A AEV  LY+       +  E+Q++   H++         +++A+EG+M M DL VQA
Sbjct: 335 GGALAEVILLYENMGEHKAEDDENQMMERTHQD--------ISYLAIEGIMNMPDLAVQA 386

Query: 373 LALTIRYLKQFGFENILCSGASFRPLSSSMEMTLSANAMQQLEVLKNNFDGTEHGSLLQC 194
           LALTI +LKQFGFE IL  GASFRPL+S++EM LSAN +QQLEVL+NN +G++ GSL   
Sbjct: 387 LALTISHLKQFGFEQILRLGASFRPLTSNVEMNLSANTLQQLEVLRNNSNGSDSGSLFNI 446

Query: 193 MNNTLTISGSRVLKHWVTHPLCDRNMIHSRLDAVSEIAESMGSHKASEDP-KFDEGSFDI 17
           MN+TLTISGSR+L+HWVTHPLCDRNMI +RLDAVSEIAESMGS+KA ++   FDE   D+
Sbjct: 447 MNHTLTISGSRLLRHWVTHPLCDRNMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDV 506

Query: 16  TIVRP 2
            I++P
Sbjct: 507 AIIQP 511


>emb|CBI31781.3| unnamed protein product [Vitis vinifera]
          Length = 903

 Score =  236 bits (603), Expect = 3e-60
 Identities = 138/243 (56%), Positives = 160/243 (65%), Gaps = 21/243 (8%)
 Frame = -1

Query: 712 GEFNDNFMRXXXXXXXXXXXXXXXXXXXXXSKQTEKLLLAYAGPTSNVRVEHTTIDSFNQ 533
           GEFNDNFMR                     SKQTEKLLLAYAGP SNVRVE T+ D F+ 
Sbjct: 152 GEFNDNFMRAGLEAVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSD 211

Query: 532 VSAFAEVKSLYDKKSESQVIRNCHE-EETEVKIHATAHMAME------------------ 410
             A AEV SLY+  SE+   R  H+ + TEV       +A+E                  
Sbjct: 212 GGALAEVMSLYENLSENS--RADHQVDNTEVMEQENHCLAIEPPTTSYVKFVSVHYGSGI 269

Query: 409 --GVMAMSDLVVQALALTIRYLKQFGFENILCSGASFRPLSSSMEMTLSANAMQQLEVLK 236
             G+M+M DL VQALALTIR+LKQFG E ILC GASFRP SS+MEMTLSANA+QQLEVL 
Sbjct: 270 ALGIMSMPDLAVQALALTIRHLKQFGLERILCMGASFRPFSSNMEMTLSANALQQLEVLN 329

Query: 235 NNFDGTEHGSLLQCMNNTLTISGSRVLKHWVTHPLCDRNMIHSRLDAVSEIAESMGSHKA 56
           N+ DG+E GSLL  MN+TLTI GSR+L+HWV+HPLCD NMI +RLDAVSEI  SMGS KA
Sbjct: 330 NHSDGSESGSLLHTMNHTLTIFGSRLLRHWVSHPLCDSNMISARLDAVSEIVMSMGSCKA 389

Query: 55  SED 47
           S++
Sbjct: 390 SQN 392