BLASTX nr result

ID: Bupleurum21_contig00031039 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00031039
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...   102   2e-20
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...   102   4e-20
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...   100   1e-19
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   100   2e-19
gb|AAF63113.1|AC006423_14 Hypothetical protein [Arabidopsis thal...    98   6e-19

>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score =  102 bits (255), Expect = 2e-20
 Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
 Frame = -3

Query: 502 MRDFKDCVTNVGLSDLYCTGESMTWWNSCDRNPIYRKLDRVLINSEWLVQFPMSSAIFQV 323
           M     C+    + DL+ +G   TW N C  N I RKLDRVL+N +W + FP+S A F  
Sbjct: 162 MHRLDTCIREAKVDDLWYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLNFPLSEARFLP 221

Query: 322 RGLSDHCPALVRTGVEWKVIKKPFQMFLHLMDNPDFLPLVCEAWSTQVHGDPWLVLTQKL 143
            G+SDH P +V+     + IKKPF+ F   MD+ +F+PLV + W     G P   L  KL
Sbjct: 222 SGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGGCPMYQLCCKL 281

Query: 142 KMVKKSMTLLN-KKVGNIHSNVQSCRDAL 59
           +  K+ + L N     NI   V+  ++ +
Sbjct: 282 RKQKQELKLFNMAHFSNISDRVKDAKNEM 310


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
           putative protein [Arabidopsis thaliana]
          Length = 1141

 Score =  102 bits (253), Expect = 4e-20
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
 Frame = -3

Query: 502 MRDFKDCVTNVGLSDLYCTGESMTWWNSCDRNPIYRKLDRVLINSEWLVQFPMSSAIFQV 323
           +RDF++C+ +  LSDL   G S TWWN     P+ +K+DR+L+N  W   FP S  +F  
Sbjct: 158 IRDFRECLLDAELSDLVYKGSSFTWWNKSKTRPVAKKIDRILVNESWSNLFPSSFGLFGP 217

Query: 322 RGLSDHCPALVRTGVEWKVIKKPFQMFLHLMDNPDFLPLVCEAW-STQVHGDPWLVLTQK 146
              SDH    V   ++    K+PF+ F  L+ NP+FL LV + W ST V G     +++K
Sbjct: 218 PDFSDHASCGVVLELDPIKAKRPFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKK 277

Query: 145 LKMVKKSMTLLNK-KVGNIHSNVQSCRDALR*FQ 47
           LK +KK +   ++    N+    +   + L  FQ
Sbjct: 278 LKALKKPIKDFSRLNYSNLEKRTEEAHETLLSFQ 311


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
           predicted protein [Populus trichocarpa]
          Length = 819

 Score =  100 bits (249), Expect = 1e-19
 Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
 Frame = -3

Query: 484 CVTNVGLSDLYCTGESMTWWNSCDRNPIYRKLDRVLINSEWLVQFPMSSAIFQVRGLSDH 305
           C+    + DL  +G   TW N C  N I RKLDRVL+N +W ++FP+S A F   G+SDH
Sbjct: 545 CIREAKVDDLRYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLKFPLSEARFLPSGMSDH 604

Query: 304 CPALVRTGVEWKVIKKPFQMFLHLMDNPDFLPLVCEAWSTQVHGDPWLVLTQKLKMVKKS 125
            P +V+     +  KKPF+ F   MD+ +F+PLV + W     G P   L  KL+ +K+ 
Sbjct: 605 SPMVVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLCCKLRKLKQE 664

Query: 124 MTLLN-KKVGNIHSNVQSCRDAL 59
           + L N     NI   V+  ++ +
Sbjct: 665 LKLFNMAHFSNISDRVRDAKNKM 687


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  100 bits (248), Expect = 2e-19
 Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
 Frame = -3

Query: 508 QGMRDFKDCVTNVGLSDLYCTGESMTWWNSCDRNPIYRKLDRVLINSEWLVQFPMSSAIF 329
           +GM +F++C+    +SDL   G   TWWN+ + NPI +K+DR+L+N  WL+  P+S   F
Sbjct: 162 RGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSF 221

Query: 328 QVRGLSDHCPALVRTGVEWKVIKKPFQMFLHLMDNPDFLPLVCEAWSTQVH-GDPWLVLT 152
                SDHCP+ V    +     KPF++   LM +P+F+  +   W    + G     L+
Sbjct: 222 CAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLS 281

Query: 151 QKLKMVKKSMTLLN--------KKVGNIHSNVQSCRDAL 59
           +K K +K ++   N        K+V     N+++C++ L
Sbjct: 282 KKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNL 320


>gb|AAF63113.1|AC006423_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 668

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
 Frame = -3

Query: 508 QGMRDFKDCVTNVGLSDLYCTGESMTWWNSCDRNPIYRKLDRVLINSEWLVQFPMSSAIF 329
           +G+ +F++C+ +  L D+   G   TW N  D NPI RKLDR + N +W   FP + A+F
Sbjct: 183 RGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVF 242

Query: 328 QVRGLSDHCPALVRTGVEWKVIKKPFQMFLHLMDNPDFLPLVCEAWSTQVH-GDPWLVLT 152
           ++ G+SDH P ++      K  KK F+ F  L  +P FL  +  AW  Q+  G     L 
Sbjct: 243 ELSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLG 302

Query: 151 QKLKMVKKSMTLLNKK-VGNIHSNVQSCRDALR*FQ 47
           + LK  KK   LLN++  GNI    +   D+L   Q
Sbjct: 303 EHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQ 338


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