BLASTX nr result
ID: Bupleurum21_contig00030999
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Bupleurum21_contig00030999 (344 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containin... 60 2e-07 ref|XP_003539900.1| PREDICTED: zinc finger CCCH domain-containin... 60 2e-07 emb|CBI17184.3| unnamed protein product [Vitis vinifera] 57 2e-06 ref|XP_002274487.1| PREDICTED: zinc finger CCCH domain-containin... 57 2e-06 ref|XP_002313352.1| predicted protein [Populus trichocarpa] gi|2... 57 2e-06 >ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like [Glycine max] Length = 704 Score = 59.7 bits (143), Expect = 2e-07 Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 10/107 (9%) Frame = +1 Query: 52 SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDF--ADSPPDG 225 S SVND LG ++D N+ G GWKPC+YFA +HG AD+ G Sbjct: 213 SCSVNDACLG----TEDPNS---GLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAMVG 265 Query: 226 SPN----FDGFDEMMRMKAIQNQRLAMA----AGAPHPYSNRCMAFL 342 SP+ + E++R K+ Q QRLA A A + PYS +CM FL Sbjct: 266 SPSKIEMMEQCHELLRSKSGQQQRLAAASQLMASSTFPYSPKCMNFL 312 >ref|XP_003539900.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like [Glycine max] Length = 698 Score = 59.7 bits (143), Expect = 2e-07 Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 10/107 (9%) Frame = +1 Query: 52 SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDF--ADSPPDG 225 S SVND LG ++D N+ G GWKPC+YFA +HG AD+ G Sbjct: 206 SCSVNDACLG----TEDPNS---GLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAMVG 258 Query: 226 SPN----FDGFDEMMRMKAIQNQRLAMA----AGAPHPYSNRCMAFL 342 SP+ + E++R K+ Q QRLA A + + PYS +CM FL Sbjct: 259 SPSKIEMMEQCHELLRSKSAQQQRLAAASQLMSSSTFPYSPKCMNFL 305 >emb|CBI17184.3| unnamed protein product [Vitis vinifera] Length = 615 Score = 56.6 bits (135), Expect = 2e-06 Identities = 47/111 (42%), Positives = 54/111 (48%), Gaps = 15/111 (13%) Frame = +1 Query: 52 SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDFADSPPD--- 222 S S ND G SDD + GFGWKPC+YFA +HG FADS Sbjct: 126 SYSFNDACYG----SDDGAS---GFGWKPCLYFARGFCKNGNTCKFLHGGFADSVEASSA 178 Query: 223 ------GSP-NFDGFD-EMMRMKAIQNQRLAMA----AGAPHPYSNRCMAF 339 GSP DGF+ EM+R Q QRLA+A AG PY N+CM F Sbjct: 179 ASAAIVGSPGKLDGFEQEMLRS---QQQRLAVASQLMAGLNFPY-NKCMNF 225 >ref|XP_002274487.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like [Vitis vinifera] Length = 695 Score = 56.6 bits (135), Expect = 2e-06 Identities = 47/111 (42%), Positives = 54/111 (48%), Gaps = 15/111 (13%) Frame = +1 Query: 52 SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDFADSPPD--- 222 S S ND G SDD + GFGWKPC+YFA +HG FADS Sbjct: 206 SYSFNDACYG----SDDGAS---GFGWKPCLYFARGFCKNGNTCKFLHGGFADSVEASSA 258 Query: 223 ------GSP-NFDGFD-EMMRMKAIQNQRLAMA----AGAPHPYSNRCMAF 339 GSP DGF+ EM+R Q QRLA+A AG PY N+CM F Sbjct: 259 ASAAIVGSPGKLDGFEQEMLRS---QQQRLAVASQLMAGLNFPY-NKCMNF 305 >ref|XP_002313352.1| predicted protein [Populus trichocarpa] gi|222849760|gb|EEE87307.1| predicted protein [Populus trichocarpa] Length = 685 Score = 56.6 bits (135), Expect = 2e-06 Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 10/93 (10%) Frame = +1 Query: 94 SDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDFADSPP-DGSPN----FDGFDEMM 258 S+D+N+ GFGWKPC+YF+ VHGD ADS GSP+ F+ E++ Sbjct: 216 SEDSNS---GFGWKPCLYFSRGFCKNGTGCRFVHGDSADSAAIVGSPSELNEFEQCQEIL 272 Query: 259 RMKAIQNQRLAMA-----AGAPHPYSNRCMAFL 342 R KA QR A AGA N+CM FL Sbjct: 273 RSKAAAQQRKLAAASQFMAGATFLPQNKCMNFL 305