BLASTX nr result

ID: Bupleurum21_contig00030999 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00030999
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containin...    60   2e-07
ref|XP_003539900.1| PREDICTED: zinc finger CCCH domain-containin...    60   2e-07
emb|CBI17184.3| unnamed protein product [Vitis vinifera]               57   2e-06
ref|XP_002274487.1| PREDICTED: zinc finger CCCH domain-containin...    57   2e-06
ref|XP_002313352.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
           [Glycine max]
          Length = 704

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
 Frame = +1

Query: 52  SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDF--ADSPPDG 225
           S SVND  LG    ++D N+   G GWKPC+YFA            +HG    AD+   G
Sbjct: 213 SCSVNDACLG----TEDPNS---GLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAMVG 265

Query: 226 SPN----FDGFDEMMRMKAIQNQRLAMA----AGAPHPYSNRCMAFL 342
           SP+     +   E++R K+ Q QRLA A    A +  PYS +CM FL
Sbjct: 266 SPSKIEMMEQCHELLRSKSGQQQRLAAASQLMASSTFPYSPKCMNFL 312


>ref|XP_003539900.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
           [Glycine max]
          Length = 698

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
 Frame = +1

Query: 52  SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDF--ADSPPDG 225
           S SVND  LG    ++D N+   G GWKPC+YFA            +HG    AD+   G
Sbjct: 206 SCSVNDACLG----TEDPNS---GLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAMVG 258

Query: 226 SPN----FDGFDEMMRMKAIQNQRLAMA----AGAPHPYSNRCMAFL 342
           SP+     +   E++R K+ Q QRLA A    + +  PYS +CM FL
Sbjct: 259 SPSKIEMMEQCHELLRSKSAQQQRLAAASQLMSSSTFPYSPKCMNFL 305


>emb|CBI17184.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 47/111 (42%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
 Frame = +1

Query: 52  SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDFADSPPD--- 222
           S S ND   G    SDD  +   GFGWKPC+YFA            +HG FADS      
Sbjct: 126 SYSFNDACYG----SDDGAS---GFGWKPCLYFARGFCKNGNTCKFLHGGFADSVEASSA 178

Query: 223 ------GSP-NFDGFD-EMMRMKAIQNQRLAMA----AGAPHPYSNRCMAF 339
                 GSP   DGF+ EM+R    Q QRLA+A    AG   PY N+CM F
Sbjct: 179 ASAAIVGSPGKLDGFEQEMLRS---QQQRLAVASQLMAGLNFPY-NKCMNF 225


>ref|XP_002274487.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
           [Vitis vinifera]
          Length = 695

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 47/111 (42%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
 Frame = +1

Query: 52  SVSVNDVFLGNGGQSDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDFADSPPD--- 222
           S S ND   G    SDD  +   GFGWKPC+YFA            +HG FADS      
Sbjct: 206 SYSFNDACYG----SDDGAS---GFGWKPCLYFARGFCKNGNTCKFLHGGFADSVEASSA 258

Query: 223 ------GSP-NFDGFD-EMMRMKAIQNQRLAMA----AGAPHPYSNRCMAF 339
                 GSP   DGF+ EM+R    Q QRLA+A    AG   PY N+CM F
Sbjct: 259 ASAAIVGSPGKLDGFEQEMLRS---QQQRLAVASQLMAGLNFPY-NKCMNF 305


>ref|XP_002313352.1| predicted protein [Populus trichocarpa] gi|222849760|gb|EEE87307.1|
           predicted protein [Populus trichocarpa]
          Length = 685

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
 Frame = +1

Query: 94  SDDANNVHGGFGWKPCMYFAXXXXXXXXXXXXVHGDFADSPP-DGSPN----FDGFDEMM 258
           S+D+N+   GFGWKPC+YF+            VHGD ADS    GSP+    F+   E++
Sbjct: 216 SEDSNS---GFGWKPCLYFSRGFCKNGTGCRFVHGDSADSAAIVGSPSELNEFEQCQEIL 272

Query: 259 RMKAIQNQRLAMA-----AGAPHPYSNRCMAFL 342
           R KA   QR   A     AGA     N+CM FL
Sbjct: 273 RSKAAAQQRKLAAASQFMAGATFLPQNKCMNFL 305