BLASTX nr result

ID: Bupleurum21_contig00030841 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00030841
         (605 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588306.1| Ribosomal protein S3 [Medicago truncatula] g...    70   2e-10
ref|XP_002535311.1| conserved hypothetical protein [Ricinus comm...    60   4e-07

>ref|XP_003588306.1| Ribosomal protein S3 [Medicago truncatula]
           gi|355477354|gb|AES58557.1| Ribosomal protein S3
           [Medicago truncatula]
          Length = 306

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 38/58 (65%), Positives = 39/58 (67%)
 Frame = -3

Query: 183 MGQRIKRFYFVSRDTPQVGFESRVMGDYPARFGEHF*SALVNGSPPIKQEISGSSHGG 10
           MGQRIKRF FVSRD+PQVGFESRVMGDYPARFGE                 SG SHGG
Sbjct: 1   MGQRIKRFDFVSRDSPQVGFESRVMGDYPARFGE-----------------SGYSHGG 41


>ref|XP_002535311.1| conserved hypothetical protein [Ricinus communis]
           gi|223523476|gb|EEF27072.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 63

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 38/61 (62%), Positives = 42/61 (68%), Gaps = 7/61 (11%)
 Frame = +2

Query: 212 SSDAARDKLSF*LLSFGSDKLSPFGRFAQ-------VVFPYLP*R*DSGLRKEPLPSALN 370
           +SDAARD+LSF  LSFGSDK SPFGRFAQ       V FP +  +  SGLRKE  PS LN
Sbjct: 5   ASDAARDRLSFKPLSFGSDKSSPFGRFAQVRWSSRSVGFPNV--KSCSGLRKEHRPSTLN 62

Query: 371 E 373
           E
Sbjct: 63  E 63


Top