BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00030794
         (554 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...   171   7e-41
emb|CBI18522.3| unnamed protein product [Vitis vinifera]              171   7e-41
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]   171   7e-41
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   168   5e-40
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ...   164   1e-38

>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  171 bits (433), Expect = 7e-41
 Identities = 86/171 (50%), Positives = 120/171 (70%), Gaps = 4/171 (2%)
 Frame = +3

Query: 54  HAFCCEGNMDKAIEILEMMMLNNL-YPFNNYVCSSVISGFVKVNKPDIAIGFFENAVKTY 230
           H+F  +G M +AIE+LE+M  + + YPF N+V SSVISGF K++KP +A+GFFENAV + 
Sbjct: 58  HSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSR 117

Query: 231 DLHPNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREA 401
            L PNI T TALL A ++LGR  E   L   +E+    FDVV+Y+ W+   FR+G++ EA
Sbjct: 118 VLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEA 177

Query: 402 FLKYKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
             K+KE +++    DT++YT+LIDG  R G VEK +G L KM+K+GL+PNL
Sbjct: 178 IRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNL 228



 Score = 61.6 bits (148), Expect = 8e-08
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +3

Query: 240 PNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREAFLK 410
           P+ V+YT L+  + R G  ++      +++K+G++ ++V YT  M    +KG + EA+  
Sbjct: 191 PDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTL 250

Query: 411 YKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
           +K   +   ++D   Y  LIDG C  G ++   GLL  MEK G+ P++
Sbjct: 251 FKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSI 298


>emb|CBI18522.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  171 bits (433), Expect = 7e-41
 Identities = 86/171 (50%), Positives = 120/171 (70%), Gaps = 4/171 (2%)
 Frame = +3

Query: 54  HAFCCEGNMDKAIEILEMMMLNNL-YPFNNYVCSSVISGFVKVNKPDIAIGFFENAVKTY 230
           H+F  +G M +AIE+LE+M  + + YPF N+V SSVISGF K++KP +A+GFFENAV + 
Sbjct: 58  HSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSR 117

Query: 231 DLHPNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREA 401
            L PNI T TALL A ++LGR  E   L   +E+    FDVV+Y+ W+   FR+G++ EA
Sbjct: 118 VLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEA 177

Query: 402 FLKYKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
             K+KE +++    DT++YT+LIDG  R G VEK +G L KM+K+GL+PNL
Sbjct: 178 IRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNL 228



 Score = 61.6 bits (148), Expect = 8e-08
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +3

Query: 240 PNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREAFLK 410
           P+ V+YT L+  + R G  ++      +++K+G++ ++V YT  M    +KG + EA+  
Sbjct: 191 PDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTL 250

Query: 411 YKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
           +K   +   ++D   Y  LIDG C  G ++   GLL  MEK G+ P++
Sbjct: 251 FKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSI 298


>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  171 bits (433), Expect = 7e-41
 Identities = 86/171 (50%), Positives = 120/171 (70%), Gaps = 4/171 (2%)
 Frame = +3

Query: 54  HAFCCEGNMDKAIEILEMMMLNNL-YPFNNYVCSSVISGFVKVNKPDIAIGFFENAVKTY 230
           H+F  +G M +AIE+LE+M  + + YPF N+V SSVISGF K++KP +A+GFFENAV + 
Sbjct: 58  HSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSR 117

Query: 231 DLHPNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREA 401
            L PNI T TALL A ++LGR  E   L   +E+    FDVV+Y+ W+   FR+G++ EA
Sbjct: 118 VLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEA 177

Query: 402 FLKYKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
             K+KE +++    DT++YT+LIDG  R G VEK +G L KM+K+GL+PNL
Sbjct: 178 IRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNL 228



 Score = 61.6 bits (148), Expect = 8e-08
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +3

Query: 240 PNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREAFLK 410
           P+ V+YT L+  + R G  ++      +++K+G++ ++V YT  M    +KG + EA+  
Sbjct: 191 PDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTL 250

Query: 411 YKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
           +K   +   ++D   Y  LIDG C  G ++   GLL  MEK G+ P++
Sbjct: 251 FKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSI 298


>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  168 bits (426), Expect = 5e-40
 Identities = 83/171 (48%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
 Frame = +3

Query: 54  HAFCCEGNMDKAIEILEMMMLNNL-YPFNNYVCSSVISGFVKVNKPDIAIGFFENAVKTY 230
           H+F  +GNM  AI++LE+M    + YPF N+VCSS++SGF K+ KP++A+GFFEN++K  
Sbjct: 155 HSFVLQGNMSGAIQVLELMNDEKINYPFCNFVCSSIVSGFCKMGKPELAMGFFENSLKLG 214

Query: 231 DLHPNIVTYTALLAAYYRLGRFDELF---VQIEKNGVEFDVVYYTCWMYECFRKGLIREA 401
            L PN+VTYTA++++   LGR DE+F    ++E+ G+ FDVV+Y+CW+   FR G+  EA
Sbjct: 215 ALKPNLVTYTAVVSSLCMLGRADEVFDLVCEMEEEGLAFDVVFYSCWICGYFRNGVFIEA 274

Query: 402 FLKYKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
             K+KE + +    DTI YT+LIDG  + G VEK VG L  M   G  PNL
Sbjct: 275 IRKHKEMVKKGISSDTIGYTILIDGFSKEGSVEKSVGFLHHMLANGSEPNL 325



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
 Frame = +3

Query: 156 VISGFVKVNKPDIAIGFFENAVKTYDLHPNIVTYTALLAAYYRLGRFDE---LFVQIEKN 326
           +I GF K    + ++GF  + +      PN+VTYTA++  + R G+ DE   +F  +E  
Sbjct: 296 LIDGFSKEGSVEKSVGFLHHMLANGS-EPNLVTYTAIILGFCRKGKIDEAFAIFKLVENL 354

Query: 327 GVEFDVVYYTCWMYECFRKGLIREAFLKYKEFLDRKFDMDTIAYTVLIDGLCRIG 491
           G++ D   Y   +     KG    A+   +E   +      +AY +LI+ LC+ G
Sbjct: 355 GIKLDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYNILINSLCKAG 409


>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
           gi|332009488|gb|AED96871.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score =  164 bits (414), Expect = 1e-38
 Identities = 81/171 (47%), Positives = 123/171 (71%), Gaps = 4/171 (2%)
 Frame = +3

Query: 54  HAFCCEGNMDKAIEILEMMMLNNL-YPFNNYVCSSVISGFVKVNKPDIAIGFFENAVKTY 230
           + F  +G MD AIE+LEMM   N+ YPF+N+VCS+VISGF K+ KP++A+GFFE+AV + 
Sbjct: 142 YRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVDSG 201

Query: 231 DLHPNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREA 401
            L PN+VTYT L++A  +LG+ DE   L  ++E  G EFD V+Y+ W++  F+ G + +A
Sbjct: 202 VLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDA 261

Query: 402 FLKYKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
            ++ +E +++  + D ++Y++LIDGL + G VE+ +GLL KM KEG+ PNL
Sbjct: 262 LMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNL 312



 Score = 61.6 bits (148), Expect = 8e-08
 Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
 Frame = +3

Query: 57  AFCCEGNMDKAIEILEMMMLNNLYPFNNYVCSSVISGFVKVNKPDIAIGFFENAVKTYDL 236
           A C  G +D+  +++  +  +  + F+    S+ I G+ K      A+      V+   +
Sbjct: 216 ALCQLGKVDEVRDLVRRLE-DEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVEK-GM 273

Query: 237 HPNIVTYTALLAAYYRLGRFDE---LFVQIEKNGVEFDVVYYTCWMYECFRKGLIREAFL 407
           + ++V+Y+ L+    + G  +E   L  ++ K GVE +++ YT  +    + G + EAF+
Sbjct: 274 NRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFV 333

Query: 408 KYKEFLDRKFDMDTIAYTVLIDGLCRIGIVEKGVGLLSKMEKEGLRPNL 554
            +   L    ++D   Y  LIDG+CR G + +   +L  ME+ G++P++
Sbjct: 334 LFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSI 382



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
 Frame = +3

Query: 150 SSVISGFVKVNKPDIAIGFFENAVKTYDLHPNIVTYTALLAAYYRLGRFDELFV---QIE 320
           S +I G  K    + A+G     +K   + PN++TYTA++    ++G+ +E FV   +I 
Sbjct: 281 SILIDGLSKEGNVEEALGLLGKMIKE-GVEPNLITYTAIIRGLCKMGKLEEAFVLFNRIL 339

Query: 321 KNGVEFDVVYYTCWMYECFRKGLIREAFLKYKEFLDRKFDMDTIAYTVLIDGLCRIGIVE 500
             G+E D   Y   +    RKG +  AF    +   R      + Y  +I+GLC  G V 
Sbjct: 340 SVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVS 399

Query: 501 K 503
           +
Sbjct: 400 E 400