BLASTX nr result
ID: Bupleurum21_contig00030671
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00030671
(487 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 154 4e-53
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi... 147 7e-51
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 139 3e-47
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 147 6e-47
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi... 147 6e-47
>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 154 bits (389), Expect(2) = 4e-53
Identities = 70/118 (59%), Positives = 96/118 (81%), Gaps = 1/118 (0%)
Frame = +2
Query: 137 FEGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKWPVRIRLGTA 316
F+ GLQMFRLMQ + +EPDEA+ VS+LCACA++GA++IG+W+H YL+++ P+ +RL T
Sbjct: 218 FKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTG 277
Query: 317 LVDMYAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDG-GALRLLDAMERCNVQ 487
L+DMYAKCG LD+A+K+F M +RDTI WNA+ISG+AM+GDG ALRL ME+ V+
Sbjct: 278 LIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVK 335
Score = 79.0 bits (193), Expect(2) = 4e-53
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +3
Query: 12 LLISEYAKKGDVYAARLFFDESPVKDRGVWGSMISGYVQNNCLKEGCRCF 161
++IS YAK GDV AR+ FDE+P+KDRG+WGS+ISGYVQNNC KEG + F
Sbjct: 176 VMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMF 225
Score = 57.0 bits (136), Expect = 2e-06
Identities = 33/104 (31%), Positives = 52/104 (50%)
Frame = +2
Query: 149 LQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKWPVRIRLGTALVDM 328
+Q++ M + + PD VL ACA + + +G HG K+ + I +G L+ M
Sbjct: 90 IQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAM 149
Query: 329 YAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDGGALRLL 460
Y+ G + A +F +MP +SW +ISG A GD R+L
Sbjct: 150 YSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARML 193
>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 147 bits (372), Expect(2) = 7e-51
Identities = 69/118 (58%), Positives = 93/118 (78%), Gaps = 1/118 (0%)
Frame = +2
Query: 137 FEGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKWPVRIRLGTA 316
F+ GL +FRL+QL+ V PDE++FVS+L ACA++GALDIGIWIH YL + + IRL T+
Sbjct: 218 FKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTS 277
Query: 317 LVDMYAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDG-GALRLLDAMERCNVQ 487
L+DMYAKCG L+LA+++F MPERD + WNA+ISGLAMHGDG AL++ ME+ ++
Sbjct: 278 LLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIK 335
Score = 78.2 bits (191), Expect(2) = 7e-51
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +3
Query: 12 LLISEYAKKGDVYAARLFFDESPVKDRGVWGSMISGYVQNNCLKEGCRCF 161
++IS YAK GDV +ARLFFDE+P KDRG+WG+MISGYVQN+C KEG F
Sbjct: 176 VMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLF 225
Score = 67.0 bits (162), Expect = 2e-09
Identities = 38/107 (35%), Positives = 55/107 (51%)
Frame = +2
Query: 137 FEGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKWPVRIRLGTA 316
F G +F M + + PD VL ACA + +G +HGY K+ I +G +
Sbjct: 86 FYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNS 145
Query: 317 LVDMYAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDGGALRL 457
L+ MY+ CG + A VF +MP +SW+ +ISG A GD + RL
Sbjct: 146 LMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARL 192
>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 525
Score = 139 bits (350), Expect(2) = 3e-47
Identities = 66/119 (55%), Positives = 94/119 (78%), Gaps = 2/119 (1%)
Frame = +2
Query: 137 FEGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKW-PVRIRLGT 313
F+ L +FRLMQL+ + PDE++FVS+L ACA++GAL+IG+WIH +L ++K P+ +RL T
Sbjct: 220 FKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLST 279
Query: 314 ALVDMYAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDG-GALRLLDAMERCNVQ 487
+L+DMYAKCG L+LA+++F M RD + WNA+ISG+AMHGDG GAL+L ME+ V+
Sbjct: 280 SLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVK 338
Score = 74.7 bits (182), Expect(2) = 3e-47
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +3
Query: 12 LLISEYAKKGDVYAARLFFDESPVKDRGVWGSMISGYVQNNCLKEGCRCF 161
++IS YAK GDV +ARLFFDE+P KD+G+WG+MISGYVQN+C KE F
Sbjct: 178 VMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLF 227
Score = 65.1 bits (157), Expect = 6e-09
Identities = 38/107 (35%), Positives = 54/107 (50%)
Frame = +2
Query: 137 FEGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKWPVRIRLGTA 316
F+ LQ+F M S ++PD VL AC G IHGY K+ I +G +
Sbjct: 88 FKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNS 147
Query: 317 LVDMYAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDGGALRL 457
L+ MY G + A VF ++P + +SW+ +ISG A GD + RL
Sbjct: 148 LMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARL 194
>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 147 bits (370), Expect(2) = 6e-47
Identities = 68/118 (57%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
Frame = +2
Query: 137 FEGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKWPVRIRLGTA 316
F+ GL MFRLMQL+ VEPDEA+ V++L ACA+MGALD GIWIH YL ++ P+ +R+ T
Sbjct: 218 FKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTG 277
Query: 317 LVDMYAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDG-GALRLLDAMERCNVQ 487
L+DMYAKCG LDLA+ +F +M +RD + WNA+ISG+AM GDG GA++L ME+ ++
Sbjct: 278 LIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Score = 65.9 bits (159), Expect(2) = 6e-47
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = +3
Query: 12 LLISEYAKKGDVYAARLFFDESPVKDRGVWGSMISGYVQNNCLKEGCRCF 161
++I YA GDV AR FD + VKD G+WG+MISGYVQNNC KEG F
Sbjct: 176 VMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMF 225
Score = 56.2 bits (134), Expect(2) = 1e-09
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Frame = +2
Query: 140 EGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKI-KWPVRIRLGTA 316
EG +++F M+ + ++PD F++V AC+N G +D GI I + + K +
Sbjct: 320 EGAIKLFMEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGC 379
Query: 317 LVDMYAKCGRLDLAEKVFYKMPE-----RDTISWNAVISGLAMHG 436
++D+ ++ GR + AE V ++P+ + ++W A +S HG
Sbjct: 380 VIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHG 424
Score = 31.2 bits (69), Expect(2) = 1e-09
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LISEYAKKGDVYAARLFFDESPVKDRGVWGSMISG 119
LI YAK G + A+ F+E +D W +MISG
Sbjct: 278 LIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISG 312
>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 147 bits (370), Expect(2) = 6e-47
Identities = 68/118 (57%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
Frame = +2
Query: 137 FEGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKIKWPVRIRLGTA 316
F+ GL MFRLMQL+ VEPDEA+ V++L ACA+MGALD GIWIH YL ++ P+ +R+ T
Sbjct: 218 FKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTG 277
Query: 317 LVDMYAKCGRLDLAEKVFYKMPERDTISWNAVISGLAMHGDG-GALRLLDAMERCNVQ 487
L+DMYAKCG LDLA+ +F +M +RD + WNA+ISG+AM GDG GA++L ME+ ++
Sbjct: 278 LIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Score = 65.9 bits (159), Expect(2) = 6e-47
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = +3
Query: 12 LLISEYAKKGDVYAARLFFDESPVKDRGVWGSMISGYVQNNCLKEGCRCF 161
++I YA GDV AR FD + VKD G+WG+MISGYVQNNC KEG F
Sbjct: 176 VMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMF 225
Score = 58.9 bits (141), Expect(2) = 2e-10
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Frame = +2
Query: 140 EGGLQMFRLMQLSRVEPDEAVFVSVLCACANMGALDIGIWIHGYLEKI-KWPVRIRLGTA 316
EG +++F M+ + ++PD F++VL AC+N G +D GI I + + K +
Sbjct: 320 EGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGC 379
Query: 317 LVDMYAKCGRLDLAEKVFYKMPE-----RDTISWNAVISGLAMHG 436
++D+ ++ GR + AE V ++P+ + ++W A +S HG
Sbjct: 380 VIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHG 424
Score = 31.2 bits (69), Expect(2) = 2e-10
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LISEYAKKGDVYAARLFFDESPVKDRGVWGSMISG 119
LI YAK G + A+ F+E +D W +MISG
Sbjct: 278 LIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISG 312