BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00030606
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi...    61   1e-17
ref|XP_002518061.1| pentatricopeptide repeat-containing protein,...    51   2e-13
ref|XP_002866485.1| pentatricopeptide repeat-containing protein ...    44   2e-08
ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|2...    46   3e-08
ref|NP_201043.1| pentatricopeptide repeat-containing protein [Ar...    45   3e-08

>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like
            [Vitis vinifera]
          Length = 1101

 Score = 61.2 bits (147), Expect(2) = 1e-17
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +3

Query: 111  SHNA*KR-ISPSEASYEKLLNCFCSCGLSSNAFKIFVDMLAHGYKPCCYTLNQLFVMFIE 287
            SH   KR + P+++SYEKLL C C+  L  +AFKIF +ML+H Y PC Y  N L  +  E
Sbjct: 898  SHTMHKRGLFPNKSSYEKLLKCLCASHLGVHAFKIFEEMLSHDYVPCWYNCNWLLCILCE 957

Query: 288  DNK 296
            +++
Sbjct: 958  EHR 960



 Score = 53.1 bits (126), Expect(2) = 1e-17
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +1

Query: 1   LYNKICADGFVPDKTMYNTMIKGLCVAKRPFDALALSVTMLKRG 132
           L+NK+ ADG  PD   YN +IKGLC A R  DAL++S TM KRG
Sbjct: 862 LFNKMNADGLAPDGITYNALIKGLCKAGRLLDALSVSHTMHKRG 905


>ref|XP_002518061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542657|gb|EEF44194.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 403

 Score = 51.2 bits (121), Expect(2) = 2e-13
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = +1

Query: 1   LYNKICADGFVPDKTMYNTMIKGLCVAKRPFDALALSVTMLKRGY 135
           L+N + A+ + PDK  Y+T++KGLC A R  DAL+L  TM KRG+
Sbjct: 263 LFNLMNANAYSPDKVTYSTLLKGLCKASREIDALSLFFTMHKRGF 307



 Score = 49.3 bits (116), Expect(2) = 2e-13
 Identities = 24/53 (45%), Positives = 33/53 (62%)
 Frame = +3

Query: 138 PSEASYEKLLNCFCSCGLSSNAFKIFVDMLAHGYKPCCYTLNQLFVMFIEDNK 296
           P++ASYE L+  FC+  LS  AFK+F +MLAH Y P  YT   L  +  E+ +
Sbjct: 309 PNKASYENLIRLFCARHLSIPAFKLFEEMLAHNYLPRQYTAEWLLHILHEEER 361


>ref|XP_002866485.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312320|gb|EFH42744.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 983

 Score = 43.9 bits (102), Expect(2) = 2e-08
 Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = +1

Query: 34  PDKTMYNTMIKGLCVAKRPFDALALSVTMLKRG-YP 138
           PD+ M +T++KGLC ++RP DALAL + M K+G YP
Sbjct: 860 PDQVMCSTLLKGLCESERPLDALALMLEMQKKGIYP 895



 Score = 39.7 bits (91), Expect(2) = 2e-08
 Identities = 22/57 (38%), Positives = 28/57 (49%)
 Frame = +3

Query: 126  KRISPSEASYEKLLNCFCSCGLSSNAFKIFVDMLAHGYKPCCYTLNQLFVMFIEDNK 296
            K I P++ SYEKLL C C   L+  AFK+  DM A    P       L  +  E+ K
Sbjct: 891  KGIYPNKDSYEKLLQCLCYSRLTMEAFKVVKDMAALDIWPRSINHTWLIYILCEEKK 947


>ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|222837757|gb|EEE76122.1|
           predicted protein [Populus trichocarpa]
          Length = 893

 Score = 45.8 bits (107), Expect(2) = 3e-08
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
 Frame = +1

Query: 1   LYNKICADGF-VPDKTMYNTMIKGLCVAKRPFDALALSVTMLKRGYPLQRL 150
           L+N++ ADG   PD+  YNT++K LC + R  DAL+L  T+ KRG+   RL
Sbjct: 742 LFNRMNADGCSTPDRCTYNTLLKSLCRSGRELDALSLVHTISKRGFFPNRL 792



 Score = 37.0 bits (84), Expect(2) = 3e-08
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +3

Query: 138 PSEASYEKLLNCFCSCGLSSNAFKIFVDMLAHGYKPCCYTLNQLFVMFIEDNK 296
           P+  +YEK  + FC+  +S  AF+IF +M+A    P  Y  N L  +  E+ K
Sbjct: 789 PNRLAYEKSHHYFCAGHMSIPAFRIFEEMVACNLVPGLYRRNLLLYILCEEKK 841


>ref|NP_201043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180621|sp|Q9LVA2.1|PP443_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g62370 gi|8809650|dbj|BAA97201.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332010218|gb|AED97601.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 982

 Score = 45.4 bits (106), Expect(2) = 3e-08
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +1

Query: 34  PDKTMYNTMIKGLCVAKRPFDALALSVTMLKRG 132
           PD+ MY+T++KGLC  KRP DALAL + M K G
Sbjct: 859 PDQVMYSTLLKGLCDFKRPLDALALMLEMQKSG 891



 Score = 37.0 bits (84), Expect(2) = 3e-08
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 132  ISPSEASYEKLLNCFCSCGLSSNAFKIFVDMLAHGYKPCCYTLNQLFVMFIEDNK 296
            I+P++ SYEKLL C C   L+  A K+  DM A    P       L  +  E+ K
Sbjct: 892  INPNKDSYEKLLQCLCYSRLTMEAVKVVKDMAALDIWPRSINHTWLIYILCEEKK 946