BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00030472
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   153   2e-35
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              148   5e-34
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   139   3e-31
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   136   2e-30
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   132   3e-29

>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  153 bits (386), Expect = 2e-35
 Identities = 79/153 (51%), Positives = 101/153 (66%), Gaps = 3/153 (1%)
 Frame = +1

Query: 22  MDYNHAEEQVTP-GTVSSITFGIMTEEDAEKMAVKEIQAPSEIIHPMLGIPSPGSSQCLT 198
           MD +  EEQ  P G +  I F + TEED EK++V +I A +EI  P LG+P+P S QC T
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNP-SCQCST 59

Query: 199 CDAENVKTCEGHFGFIKFPYTILHPYFISDVAKILNRICVGCKSERIR--AKSTGSPSTR 372
           C A++ K CEGHFG IKFP+TILHPYF+++V +ILN+IC GCKS R     K   S S R
Sbjct: 60  CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRR 119

Query: 373 KKTVRCKYCDGHLKDEYPRTTFKVSSKDIYGST 471
            ++  CKYC  +  D YP   FKVSSKD++  T
Sbjct: 120 LRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKT 152


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  148 bits (373), Expect = 5e-34
 Identities = 76/151 (50%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
 Frame = +1

Query: 22  MDYNHAEEQVTP-GTVSSITFGIMTEEDAEKMAVKEIQAPSEIIHPMLGIPSPGSSQCLT 198
           MD +  EEQ  P G +  I F + TEED EK++V +I A +EI  P LG+P+P S QC T
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNP-SCQCST 59

Query: 199 CDAENVKTCEGHFGFIKFPYTILHPYFISDVAKILNRICVGCKSERIRAKSTGSPSTRKK 378
           C A++ K CEGHFG IKFP+TILHPYF+++V +ILN+IC GCKS R   +       R +
Sbjct: 60  CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTR---QGQWVKVRRLR 116

Query: 379 TVRCKYCDGHLKDEYPRTTFKVSSKDIYGST 471
           +  CKYC  +  D YP   FKVSSKD++  T
Sbjct: 117 SKGCKYCAANSNDWYPTMKFKVSSKDLFRKT 147


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score =  139 bits (349), Expect = 3e-31
 Identities = 66/148 (44%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
 Frame = +1

Query: 25  DYNHAEEQVTPGTVSSITFGIMTEEDAEKMAVKEIQAPSEIIHPMLGIPSPGSSQCLTCD 204
           D    E  +  G ++ I F +  ++D E +AV  + A +E+  P LG+P+P S QC TC 
Sbjct: 3   DEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNP-SYQCTTCG 61

Query: 205 AENVKTCEGHFGFIKFPYTILHPYFISDVAKILNRICVGCKSER--IRAKSTGSPSTRKK 378
           A ++K CEGHFG IKFPYTI+HPYF+S+VA++LN++C GCKS R  +  K     S   +
Sbjct: 62  ASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTSDYNR 121

Query: 379 TVRCKYCDGHLKDEYPRTTFKVSSKDIY 462
              C+YC G LKD YP   FK+S+ D++
Sbjct: 122 PKGCRYCFGSLKDWYPPMRFKLSTTDMF 149


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score =  136 bits (342), Expect = 2e-30
 Identities = 79/186 (42%), Positives = 101/186 (54%), Gaps = 36/186 (19%)
 Frame = +1

Query: 22  MDYNHAEEQVTP-GTVSSITFGIMTEEDAEKMAVKEIQAPSEIIHPMLGIPSPGSSQCLT 198
           MD +  EEQ  P G +  I F + TEED EK++V +I A +EI  P LG+P+P S QC T
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNP-SCQCST 59

Query: 199 CDAENVKTCEG---------------------------------HFGFIKFPYTILHPYF 279
           C A++ K CEG                                 HFG IKFP+TILHPYF
Sbjct: 60  CGAKDTKKCEGAVRQVIQKLYLLMISCYLYFLEYAKLXLFIFLGHFGVIKFPFTILHPYF 119

Query: 280 ISDVAKILNRICVGCKSERIR--AKSTGSPSTRKKTVRCKYCDGHLKDEYPRTTFKVSSK 453
           +++V +ILN+IC GCKS R     K   S S R ++  CKYC  +  D YP   FKVSSK
Sbjct: 120 LTEVVQILNKICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSSK 179

Query: 454 DIYGST 471
           D++  T
Sbjct: 180 DLFRKT 185


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 1517

 Score =  132 bits (332), Expect = 3e-29
 Identities = 71/180 (39%), Positives = 100/180 (55%), Gaps = 30/180 (16%)
 Frame = +1

Query: 22  MDYNHAEEQVTPGT-VSSITFGIMTEEDAEKMAVKEIQAPSEIIHPMLGIPSPGSSQCLT 198
           M+ + +EEQ  P   ++ + FG++TE + EK++V  I A SE+  P LG+P+P SSQC T
Sbjct: 1   MEIDFSEEQQVPSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNP-SSQCST 59

Query: 199 CDAENVKTCEG-----------------------------HFGFIKFPYTILHPYFISDV 291
           C + ++K+CEG                             HFG I FPYTI+HPYF+S+V
Sbjct: 60  CGSRDLKSCEGIVDVDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEV 119

Query: 292 AKILNRICVGCKSERIRAKSTGSPSTRKKTVRCKYCDGHLKDEYPRTTFKVSSKDIYGST 471
            +ILN+IC GCKS R+   +        +   CKYC G+    YP   FKVSSK+I+  T
Sbjct: 120 VQILNKICPGCKSIRLAKATELITKENPQRKGCKYCAGNSLGWYPPMKFKVSSKEIFRKT 179