BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00030405
         (653 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24253.3| unnamed protein product [Vitis vinifera]              213   3e-53
ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containi...   213   3e-53
ref|XP_002313262.1| predicted protein [Populus trichocarpa] gi|2...   201   1e-49
ref|XP_002869525.1| pentatricopeptide repeat-containing protein ...   192   5e-47
ref|NP_194530.1| pentatricopeptide repeat-containing protein [Ar...   179   3e-43

>emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  213 bits (541), Expect = 3e-53
 Identities = 107/211 (50%), Positives = 145/211 (68%)
 Frame = +3

Query: 21  EFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDG 200
           E  +   S ++V YNTLI GLCKAK L+EAV L +EM++    P+ VT TTL+ GLCKDG
Sbjct: 23  EMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG 82

Query: 201 KMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFN 380
           +MD  M LL+ MK +G DAD +LY  +I G C+NG++++ KE+ +EML KG S NV  ++
Sbjct: 83  RMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYS 142

Query: 381 NLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLM 560
            L+HGL + G+ KE + ++  M E GI PDV TYT LI GLCKDG+    M    LL+LM
Sbjct: 143 CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM---DLLNLM 199

Query: 561 LQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
           ++KG +P N TYN+L++GLCK   V DA K+
Sbjct: 200 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKI 230



 Score =  126 bits (316), Expect = 4e-27
 Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 2/218 (0%)
 Frame = +3

Query: 6   REFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKG 185
           +E F E      S NVV Y+ L+ GLC+    +EA  +   M      PD+VTYT LI G
Sbjct: 123 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDG 182

Query: 186 LCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPN 365
           LCKDG+    M LL+ M  +G +   + Y+ ++ G C  G V  A +I+  M+ KG   +
Sbjct: 183 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 242

Query: 366 VNMFNNLIHGLHKRGKLKEVSAMVTFMM--EQGIRPDVDTYTALIGGLCKDGKPGKVMRA 539
           V  +N L+ GL  +GK+ E   +   M   E  + P+V T+  LIGGLCK+G+   + +A
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGR---LTKA 299

Query: 540 GKLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
            K+   M++KG      TYN+L+ G  K   + +A++L
Sbjct: 300 VKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337



 Score =  119 bits (299), Expect = 4e-25
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 2/219 (0%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A E      K     +VV Y TLI G C   NL+   +L  EM  +  + ++VTY+ L+ 
Sbjct: 87  AMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVH 146

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
           GLC+ G+      +L+ M   G+  D + Y  +I G C +G    A +++N M+ KG  P
Sbjct: 147 GLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEP 206

Query: 363 NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
           +   +N L+ GL K G + +   ++  M+E+G + DV TY  L+ GLC     GKV  A 
Sbjct: 207 SNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLC---DKGKVDEAL 263

Query: 543 KLLDLML--QKGVKPRNSTYNILINGLCKNSAVPDALKL 653
           KL + M   +  ++P   T+N+LI GLCK   +  A+K+
Sbjct: 264 KLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302



 Score =  110 bits (276), Expect = 2e-22
 Identities = 64/202 (31%), Positives = 103/202 (50%)
 Frame = +3

Query: 48  NVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
           N+V YN L+ G  KA  ++EA++L  ++    + P+  TY+ LI G CK   ++   GL 
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 373

Query: 228 DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
            EM+  GL+     Y+ ++   C  G +E+AK +  EM +  C P++  FN +I G  K 
Sbjct: 374 CEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKA 433

Query: 408 GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
           G  + V  +   M+E G+RPD  T++ LI  L    K G++  A   L+ M+  G  P  
Sbjct: 434 GDFQFVKELQMKMVEMGLRPDALTFSTLINRL---SKLGELDEAKSALERMVASGFTPDA 490

Query: 588 STYNILINGLCKNSAVPDALKL 653
             Y+ L+ GL       + + L
Sbjct: 491 LVYDSLLKGLSSKGDTTEIINL 512



 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 2/194 (1%)
 Frame = +3

Query: 48  NVVGYNTLIKGLCKAKNLEEAVKLKVEM-DSQNWA-PDLVTYTTLIKGLCKDGKMDAVMG 221
           +VV YNTL+KGLC    ++EA+KL   M D++N   P++ T+  LI GLCK+G++   + 
Sbjct: 242 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVK 301

Query: 222 LLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLH 401
           +  +M  +G   + + Y+ ++ G    G +++A E+  ++L  G  PN   ++ LI G  
Sbjct: 302 IHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 361

Query: 402 KRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKP 581
           K   L     +   M   G+ P +  Y  L+  LCK+   G + +A  L   M     +P
Sbjct: 362 KMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKE---GSLEQAKSLFQEMGNANCEP 418

Query: 582 RNSTYNILINGLCK 623
              ++N +I+G  K
Sbjct: 419 DIISFNTMIDGTLK 432



 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 45/149 (30%), Positives = 80/149 (53%)
 Frame = +3

Query: 60  YNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLLDEMK 239
           YNTL+  LCK  +LE+A  L  EM + N  PD++++ T+I G  K G    V  L  +M 
Sbjct: 388 YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMV 447

Query: 240 NRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKRGKLK 419
             GL  DA+ +  +I      G++++AK  +  M++ G +P+  ++++L+ GL  +G   
Sbjct: 448 EMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTT 507

Query: 420 EVSAMVTFMMEQGIRPDVDTYTALIGGLC 506
           E+  ++  M  +G   D    + ++  LC
Sbjct: 508 EIINLLHQMAAKGTVLDRKIVSTILTCLC 536



 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 34/117 (29%), Positives = 63/117 (53%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A+  F E        +++ +NT+I G  KA + +   +L+++M      PD +T++TLI 
Sbjct: 404 AKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN 463

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKG 353
            L K G++D     L+ M   G   DA++YD +++G    GD  +   ++++M +KG
Sbjct: 464 RLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 520


>ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  213 bits (541), Expect = 3e-53
 Identities = 107/211 (50%), Positives = 145/211 (68%)
 Frame = +3

Query: 21  EFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDG 200
           E  +   S ++V YNTLI GLCKAK L+EAV L +EM++    P+ VT TTL+ GLCKDG
Sbjct: 169 EMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG 228

Query: 201 KMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFN 380
           +MD  M LL+ MK +G DAD +LY  +I G C+NG++++ KE+ +EML KG S NV  ++
Sbjct: 229 RMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYS 288

Query: 381 NLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLM 560
            L+HGL + G+ KE + ++  M E GI PDV TYT LI GLCKDG+    M    LL+LM
Sbjct: 289 CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM---DLLNLM 345

Query: 561 LQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
           ++KG +P N TYN+L++GLCK   V DA K+
Sbjct: 346 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKI 376



 Score =  126 bits (316), Expect = 4e-27
 Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 2/218 (0%)
 Frame = +3

Query: 6   REFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKG 185
           +E F E      S NVV Y+ L+ GLC+    +EA  +   M      PD+VTYT LI G
Sbjct: 269 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDG 328

Query: 186 LCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPN 365
           LCKDG+    M LL+ M  +G +   + Y+ ++ G C  G V  A +I+  M+ KG   +
Sbjct: 329 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 388

Query: 366 VNMFNNLIHGLHKRGKLKEVSAMVTFMM--EQGIRPDVDTYTALIGGLCKDGKPGKVMRA 539
           V  +N L+ GL  +GK+ E   +   M   E  + P+V T+  LIGGLCK+G+   + +A
Sbjct: 389 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGR---LTKA 445

Query: 540 GKLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
            K+   M++KG      TYN+L+ G  K   + +A++L
Sbjct: 446 VKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 483



 Score =  119 bits (299), Expect = 4e-25
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 2/219 (0%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A E      K     +VV Y TLI G C   NL+   +L  EM  +  + ++VTY+ L+ 
Sbjct: 233 AMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVH 292

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
           GLC+ G+      +L+ M   G+  D + Y  +I G C +G    A +++N M+ KG  P
Sbjct: 293 GLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEP 352

Query: 363 NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
           +   +N L+ GL K G + +   ++  M+E+G + DV TY  L+ GLC     GKV  A 
Sbjct: 353 SNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLC---DKGKVDEAL 409

Query: 543 KLLDLML--QKGVKPRNSTYNILINGLCKNSAVPDALKL 653
           KL + M   +  ++P   T+N+LI GLCK   +  A+K+
Sbjct: 410 KLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448



 Score =  110 bits (276), Expect = 2e-22
 Identities = 64/202 (31%), Positives = 103/202 (50%)
 Frame = +3

Query: 48   NVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
            N+V YN L+ G  KA  ++EA++L  ++    + P+  TY+ LI G CK   ++   GL 
Sbjct: 460  NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 519

Query: 228  DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
             EM+  GL+     Y+ ++   C  G +E+AK +  EM +  C P++  FN +I G  K 
Sbjct: 520  CEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKA 579

Query: 408  GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
            G  + V  +   M+E G+RPD  T++ LI  L    K G++  A   L+ M+  G  P  
Sbjct: 580  GDFQFVKELQMKMVEMGLRPDALTFSTLINRL---SKLGELDEAKSALERMVASGFTPDA 636

Query: 588  STYNILINGLCKNSAVPDALKL 653
              Y+ L+ GL       + + L
Sbjct: 637  LVYDSLLKGLSSKGDTTEIINL 658



 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 59/188 (31%), Positives = 93/188 (49%)
 Frame = +3

Query: 63  NTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLLDEMKN 242
           N L+  L +++N   A  +   M   +  P   + + LI+      K     G++  +  
Sbjct: 78  NFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLK 137

Query: 243 RGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKRGKLKE 422
           RG   +  + + V++G C NG V +A  ++ EM  K  SP++  +N LI+GL K  KLKE
Sbjct: 138 RGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKE 197

Query: 423 VSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRNSTYNI 602
              ++  M   G  P+  T T L+ GLCKDG+  + M   +LL+ M +KG       Y  
Sbjct: 198 AVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM---ELLEAMKKKGFDADVVLYGT 254

Query: 603 LINGLCKN 626
           LI+G C N
Sbjct: 255 LISGFCNN 262



 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 2/194 (1%)
 Frame = +3

Query: 48  NVVGYNTLIKGLCKAKNLEEAVKLKVEM-DSQNWA-PDLVTYTTLIKGLCKDGKMDAVMG 221
           +VV YNTL+KGLC    ++EA+KL   M D++N   P++ T+  LI GLCK+G++   + 
Sbjct: 388 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVK 447

Query: 222 LLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLH 401
           +  +M  +G   + + Y+ ++ G    G +++A E+  ++L  G  PN   ++ LI G  
Sbjct: 448 IHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 507

Query: 402 KRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKP 581
           K   L     +   M   G+ P +  Y  L+  LCK+   G + +A  L   M     +P
Sbjct: 508 KMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKE---GSLEQAKSLFQEMGNANCEP 564

Query: 582 RNSTYNILINGLCK 623
              ++N +I+G  K
Sbjct: 565 DIISFNTMIDGTLK 578



 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 45/149 (30%), Positives = 80/149 (53%)
 Frame = +3

Query: 60  YNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLLDEMK 239
           YNTL+  LCK  +LE+A  L  EM + N  PD++++ T+I G  K G    V  L  +M 
Sbjct: 534 YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMV 593

Query: 240 NRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKRGKLK 419
             GL  DA+ +  +I      G++++AK  +  M++ G +P+  ++++L+ GL  +G   
Sbjct: 594 EMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTT 653

Query: 420 EVSAMVTFMMEQGIRPDVDTYTALIGGLC 506
           E+  ++  M  +G   D    + ++  LC
Sbjct: 654 EIINLLHQMAAKGTVLDRKIVSTILTCLC 682



 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 34/117 (29%), Positives = 63/117 (53%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A+  F E        +++ +NT+I G  KA + +   +L+++M      PD +T++TLI 
Sbjct: 550 AKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN 609

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKG 353
            L K G++D     L+ M   G   DA++YD +++G    GD  +   ++++M +KG
Sbjct: 610 RLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 666


>ref|XP_002313262.1| predicted protein [Populus trichocarpa] gi|222849670|gb|EEE87217.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score =  201 bits (511), Expect = 1e-49
 Identities = 97/202 (48%), Positives = 138/202 (68%)
 Frame = +3

Query: 48  NVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
           ++V YNT+I GLCK K LE+AV L VEM+  +  P+  TY  L+ GLCK+G+++  M LL
Sbjct: 9   DIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLL 68

Query: 228 DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
            EMK +GL+ D ++Y  +I G C  G +++ K + +EML KG SPNV +++ LI+G  K+
Sbjct: 69  GEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKK 128

Query: 408 GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
           G  +E +A++  M E+GI+PDV TYT +IGGLCKDG+  K +    L DLM +KG +P  
Sbjct: 129 GLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKAL---DLFDLMTEKGEEPST 185

Query: 588 STYNILINGLCKNSAVPDALKL 653
            TYN+LINGLCK   + DA K+
Sbjct: 186 VTYNVLINGLCKEGCIGDAFKI 207



 Score =  120 bits (302), Expect = 2e-25
 Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 2/219 (0%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A    GE  +     +VV Y+TLI G C    L+    L  EM  +  +P++V Y+ LI 
Sbjct: 64  AMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLIN 123

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
           G CK G       +L  M  RG+  D   Y  +I G C +G   KA ++ + M  KG  P
Sbjct: 124 GFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEP 183

Query: 363 NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
           +   +N LI+GL K G + +   +   M+E+G R +V +Y  LI GLC +GK  + M   
Sbjct: 184 STVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAM--- 240

Query: 543 KLLDLMLQKG--VKPRNSTYNILINGLCKNSAVPDALKL 653
           KL   +L+ G  V+P   T+N +I GLCK   +  A+++
Sbjct: 241 KLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEI 279



 Score =  101 bits (252), Expect = 1e-19
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 2/203 (0%)
 Frame = +3

Query: 51  VVGYNTLIKGLCKAKNLEEAVKLKVEM--DSQNWAPDLVTYTTLIKGLCKDGKMDAVMGL 224
           VV YNTLI GLC    L+EA+KL   +  D     PD++T+ T+I+GLCK+G++D  + +
Sbjct: 220 VVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEI 279

Query: 225 LDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHK 404
            D M  RG   +      +I  +  +G ++KA E+   +   G  P+   ++ +I G  K
Sbjct: 280 YDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCK 339

Query: 405 RGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPR 584
              L     + + M   G+ P +  Y  L+  LCK+     + +A +L   M +   +P 
Sbjct: 340 MHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKE---SSLEQARRLFQEMKESNCEPD 396

Query: 585 NSTYNILINGLCKNSAVPDALKL 653
             ++NI+I+G  K   +  A +L
Sbjct: 397 TISFNIMIDGTLKAGDIHSAKEL 419



 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 35/237 (14%)
 Frame = +3

Query: 48  NVVGYNTLIKGLCKAKNLEEAVKLK---------------------------VEMDSQNW 146
           +V+ +NT+I+GLCK   L++AV++                            ++   + W
Sbjct: 256 DVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELW 315

Query: 147 --------APDLVTYTTLIKGLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHN 302
                    P   TY+ +I G CK   ++   GL   MK  GL      Y+ ++   C  
Sbjct: 316 KRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKE 375

Query: 303 GDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTY 482
             +E+A+ +  EM    C P+   FN +I G  K G +     ++  M + G+ PD  TY
Sbjct: 376 SSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTY 435

Query: 483 TALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
           ++ I  L    K G++  A    D M+  G+ P N  Y+ LI G   N  + + + L
Sbjct: 436 SSFINRL---SKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINL 489



 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 57/190 (30%), Positives = 89/190 (46%)
 Frame = +3

Query: 60  YNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLLDEMK 239
           Y+ +I G CK   L  A  L   M     +P L  Y TL+  LCK+  ++    L  EMK
Sbjct: 330 YSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMK 389

Query: 240 NRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKRGKLK 419
               + D I ++ +I G    GD+  AKE++N+M   G +P+   +++ I+ L K G+++
Sbjct: 390 ESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQME 449

Query: 420 EVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRNSTYN 599
           E       M+  GI PD   Y +LI G    G   ++     LL  M   GV       N
Sbjct: 450 EAKGAFDSMIASGITPDNHVYDSLIKGF---GLNDEIEEVINLLRQMADMGVILDLEITN 506

Query: 600 ILINGLCKNS 629
            ++  LC ++
Sbjct: 507 SILTFLCNSA 516



 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 48/158 (30%), Positives = 86/158 (54%)
 Frame = +3

Query: 60  YNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLLDEMK 239
           YNTL+  LCK  +LE+A +L  EM   N  PD +++  +I G  K G + +   LL++M+
Sbjct: 365 YNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQ 424

Query: 240 NRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKRGKLK 419
             GL  DA  Y   I      G +E+AK   + M++ G +P+ +++++LI G     +++
Sbjct: 425 QMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIE 484

Query: 420 EVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVM 533
           EV  ++  M + G+  D++   +++  LC   +   VM
Sbjct: 485 EVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVM 522



 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 46/130 (35%), Positives = 68/130 (52%)
 Frame = +3

Query: 234 MKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKRGK 413
           MK   +  D + Y+ +I G C    +EKA +++ EM    C PN   +  L+ GL K G+
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 414 LKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRNST 593
           ++E   ++  M  +G+  DV  Y+ LI G C     G + R   L D ML+KG+ P    
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFC---SKGCLDRGKALFDEMLEKGISPNVVV 117

Query: 594 YNILINGLCK 623
           Y+ LING CK
Sbjct: 118 YSCLINGFCK 127



 Score = 66.6 bits (161), Expect = 4e-09
 Identities = 35/129 (27%), Positives = 65/129 (50%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           AR  F E  ++    + + +N +I G  KA ++  A +L  +M      PD  TY++ I 
Sbjct: 381 ARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFIN 440

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
            L K G+M+   G  D M   G+  D  +YD +I+G   N ++E+   ++ +M   G   
Sbjct: 441 RLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVIL 500

Query: 363 NVNMFNNLI 389
           ++ + N+++
Sbjct: 501 DLEITNSIL 509


>ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315361|gb|EFH45784.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 707

 Score =  192 bits (488), Expect = 5e-47
 Identities = 101/202 (50%), Positives = 136/202 (67%)
 Frame = +3

Query: 48  NVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
           +VV YNT+I+G C+ K LE+A++L  EM     +  LVT+  LI   CK GKMD  MGLL
Sbjct: 176 DVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLL 235

Query: 228 DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
            EMK++GL+AD I+Y  +IRG C  G++++ K + +E+L +G SP    +N LI G  K 
Sbjct: 236 KEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKL 295

Query: 408 GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
           G+LKE S +  FMME+G+RP+V TYT LI GLC     GK   A +LL+LMLQK  +P  
Sbjct: 296 GRLKEASEIFEFMMERGVRPNVYTYTGLIDGLC---GVGKTKEALQLLNLMLQKDEEPNV 352

Query: 588 STYNILINGLCKNSAVPDALKL 653
            TYNI+IN LCK+S V DAL++
Sbjct: 353 VTYNIIINKLCKDSLVADALEI 374



 Score =  138 bits (348), Expect = 8e-31
 Identities = 77/204 (37%), Positives = 116/204 (56%)
 Frame = +3

Query: 42  SFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMG 221
           S+++V +  LI   CKA  ++EA+ L  EM  +    DL+ YT+LI+G C  G++D    
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKA 268

Query: 222 LLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLH 401
           L DE+  RG    AI Y+ +IRG C  G +++A EI   M+ +G  PNV  +  LI GL 
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLC 328

Query: 402 KRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKP 581
             GK KE   ++  M+++   P+V TY  +I  LCKD     V  A ++++LM ++  +P
Sbjct: 329 GVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKD---SLVADALEIVELMKKRRTRP 385

Query: 582 RNSTYNILINGLCKNSAVPDALKL 653
            N TYN L+ GLC    + +A KL
Sbjct: 386 DNITYNSLLGGLCAKGDLDEASKL 409



 Score =  108 bits (271), Expect = 7e-22
 Identities = 66/217 (30%), Positives = 110/217 (50%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A  F+ +  +     N V  + L++   + +    A  +   M  + +A ++  Y  L+K
Sbjct: 91  AFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLK 150

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
           GLC++ +    + LL EM+   L  D + Y+ VIRG C   ++EKA ++ NEM   GCS 
Sbjct: 151 GLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSW 210

Query: 363 NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
           ++  +  LI    K GK+ E   ++  M  +G+  D+  YT+LI G C     G++ R  
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFC---DCGELDRGK 267

Query: 543 KLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
            L D +L++G  P   TYN LI G CK   + +A ++
Sbjct: 268 ALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEI 304



 Score =  103 bits (257), Expect = 3e-20
 Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 2/218 (0%)
 Frame = +3

Query: 6   REFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKG 185
           +  F E  +   S   + YNTLI+G CK   L+EA ++   M  +   P++ TYT LI G
Sbjct: 267 KALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDG 326

Query: 186 LCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPN 365
           LC  GK    + LL+ M  +  + + + Y+ +I   C +  V  A EIV  M  +   P+
Sbjct: 327 LCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPD 386

Query: 366 VNMFNNLIHGLHKRGKLKEVSAMVTFMMEQG--IRPDVDTYTALIGGLCKDGKPGKVMRA 539
              +N+L+ GL  +G L E S ++  M++      PDV ++ ALI GLCK     ++ +A
Sbjct: 387 NITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKG---NRLHQA 443

Query: 540 GKLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
             + DL+++K       T NIL+N   K+  V  A++L
Sbjct: 444 LDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMEL 481



 Score = 89.0 bits (219), Expect = 7e-16
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 2/202 (0%)
 Frame = +3

Query: 54  VGYNTLIKGLCKAKNLEEAVKLKVEM--DSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
           + YN+L+ GLC   +L+EA KL   M  DS    PD++++  LI GLCK  ++   + + 
Sbjct: 388 ITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIY 447

Query: 228 DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
           D +  +    D +  + ++     +GDV KA E+  ++ +    PN + +  +I G  K 
Sbjct: 448 DLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKT 507

Query: 408 GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
           G L     ++  M    + P V  Y  L+  LC   K G + +A +L + M +    P  
Sbjct: 508 GMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLC---KKGTLDQAWRLFEEMQRDDSFPDV 564

Query: 588 STYNILINGLCKNSAVPDALKL 653
            ++NI+I+G  K   +  A  L
Sbjct: 565 ISFNIMIDGSLKAGDIKSAESL 586



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 53/193 (27%), Positives = 95/193 (49%)
 Frame = +3

Query: 3    AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
            A + +    + +G+ ++V  N L+    K+ ++ +A++L  ++ +    P+  TYTT+I 
Sbjct: 443  ALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMID 502

Query: 183  GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
            G CK G ++   GLL +M+   L      Y+ ++   C  G +++A  +  EM      P
Sbjct: 503  GFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFP 562

Query: 363  NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
            +V  FN +I G  K G +K   +++  M   G+ PD+ TY+ LI       K G +  A 
Sbjct: 563  DVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFL---KLGYLDEAI 619

Query: 543  KLLDLMLQKGVKP 581
               D M+  G +P
Sbjct: 620  SFFDKMIDSGFEP 632



 Score = 82.0 bits (201), Expect = 9e-14
 Identities = 57/200 (28%), Positives = 94/200 (47%)
 Frame = +3

Query: 48   NVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
            +V+ +N LI GLCK   L +A+ +   +  +  A D+VT   L+    K G ++  M L 
Sbjct: 423  DVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELW 482

Query: 228  DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
             ++ N  +  ++  Y  +I G C  G +  AK ++ +M      P+V  +N L+  L K+
Sbjct: 483  KQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKK 542

Query: 408  GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
            G L +   +   M      PDV ++  +I G     K G +  A  LL  M   G+ P  
Sbjct: 543  GTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSL---KAGDIKSAESLLVGMSHAGLSPDL 599

Query: 588  STYNILINGLCKNSAVPDAL 647
             TY+ LIN   K   + +A+
Sbjct: 600  FTYSKLINRFLKLGYLDEAI 619



 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
 Frame = +3

Query: 3    AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
            A E + + S +    N   Y T+I G CK   L  A  L  +M      P +  Y  L+ 
Sbjct: 478  AMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLS 537

Query: 183  GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
             LCK G +D    L +EM+      D I ++ +I G    GD++ A+ ++  M   G SP
Sbjct: 538  SLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSP 597

Query: 363  NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
            ++  ++ LI+   K G L E  +    M++ G  PD     +++      G+  K+    
Sbjct: 598  DLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFV 657

Query: 543  KLL---DLMLQK 569
            K L   D++L K
Sbjct: 658  KKLVDKDVVLDK 669



 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 35/153 (22%), Positives = 78/153 (50%)
 Frame = +3

Query: 48  NVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
           +V  YN L+  LCK   L++A +L  EM   +  PD++++  +I G  K G + +   LL
Sbjct: 528 SVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLL 587

Query: 228 DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
             M + GL  D   Y ++I      G +++A    ++M+  G  P+ ++ ++++     +
Sbjct: 588 VGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQ 647

Query: 408 GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLC 506
           G+  +++  V  ++++ +  D +    ++  +C
Sbjct: 648 GETDKLTEFVKKLVDKDVVLDKELTCTVMDYMC 680


>ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g28010 gi|4455360|emb|CAB36770.1| putative protein
           [Arabidopsis thaliana] gi|7269655|emb|CAB79603.1|
           putative protein [Arabidopsis thaliana]
           gi|332660020|gb|AEE85420.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  179 bits (455), Expect = 3e-43
 Identities = 95/211 (45%), Positives = 134/211 (63%)
 Frame = +3

Query: 21  EFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDG 200
           E  +N    +V  YNT+I+G C+ K LE+A++L  EM     +  LVT+  LI   CK G
Sbjct: 167 EMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAG 226

Query: 201 KMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFN 380
           KMD  MG L EMK  GL+AD ++Y  +IRG C  G++++ K + +E+L +G SP    +N
Sbjct: 227 KMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYN 286

Query: 381 NLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLM 560
            LI G  K G+LKE S +  FM+E+G+RP+V TYT LI GLC     GK   A +LL+LM
Sbjct: 287 TLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLC---GVGKTKEALQLLNLM 343

Query: 561 LQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
           ++K  +P   TYNI+IN LCK+  V DA+++
Sbjct: 344 IEKDEEPNAVTYNIIINKLCKDGLVADAVEI 374



 Score =  142 bits (359), Expect = 4e-32
 Identities = 82/217 (37%), Positives = 119/217 (54%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A E   E   +  S+++V +  LI   CKA  ++EA+    EM       DLV YT+LI+
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
           G C  G++D    L DE+  RG    AI Y+ +IRG C  G +++A EI   M+ +G  P
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP 315

Query: 363 NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
           NV  +  LI GL   GK KE   ++  M+E+   P+  TY  +I  LCKD   G V  A 
Sbjct: 316 NVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD---GLVADAV 372

Query: 543 KLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
           ++++LM ++  +P N TYNIL+ GLC    + +A KL
Sbjct: 373 EIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKL 409



 Score =  108 bits (269), Expect = 1e-21
 Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 2/218 (0%)
 Frame = +3

Query: 6   REFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKG 185
           +  F E  +   S   + YNTLI+G CK   L+EA ++   M  +   P++ TYT LI G
Sbjct: 267 KALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDG 326

Query: 186 LCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPN 365
           LC  GK    + LL+ M  +  + +A+ Y+ +I   C +G V  A EIV  M  +   P+
Sbjct: 327 LCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPD 386

Query: 366 VNMFNNLIHGLHKRGKLKEVSAMVTFMMEQG--IRPDVDTYTALIGGLCKDGKPGKVMRA 539
              +N L+ GL  +G L E S ++  M++      PDV +Y ALI GLCK+    ++ +A
Sbjct: 387 NITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE---NRLHQA 443

Query: 540 GKLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
             + DL+++K       T NIL+N   K   V  A++L
Sbjct: 444 LDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481



 Score =  104 bits (260), Expect = 1e-20
 Identities = 66/217 (30%), Positives = 107/217 (49%)
 Frame = +3

Query: 3   AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
           A  F+ +  +     N V  + L++   + +    A  +   M  + +A ++  +  L+K
Sbjct: 91  AFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLK 150

Query: 183 GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
           GLC++ +    + LL EM+   L  D   Y+ VIRG C   ++EKA E+ NEM   GCS 
Sbjct: 151 GLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSW 210

Query: 363 NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
           ++  +  LI    K GK+ E    +  M   G+  D+  YT+LI G C     G++ R  
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFC---DCGELDRGK 267

Query: 543 KLLDLMLQKGVKPRNSTYNILINGLCKNSAVPDALKL 653
            L D +L++G  P   TYN LI G CK   + +A ++
Sbjct: 268 ALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI 304



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 2/202 (0%)
 Frame = +3

Query: 54  VGYNTLIKGLCKAKNLEEAVKLKVEM--DSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
           + YN L+ GLC   +L+EA KL   M  DS    PD+++Y  LI GLCK+ ++   + + 
Sbjct: 388 ITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIY 447

Query: 228 DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
           D +  +    D +  + ++      GDV KA E+  ++       N + +  +I G  K 
Sbjct: 448 DLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKT 507

Query: 408 GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
           G L     ++  M    ++P V  Y  L+  LCK+   G + +A +L + M +    P  
Sbjct: 508 GMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKE---GSLDQAWRLFEEMQRDNNFPDV 564

Query: 588 STYNILINGLCKNSAVPDALKL 653
            ++NI+I+G  K   +  A  L
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESL 586



 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 52/193 (26%), Positives = 91/193 (47%)
 Frame = +3

Query: 3    AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
            A + +    + +G+ + V  N L+    KA ++ +A++L  ++       +  TYT +I 
Sbjct: 443  ALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMID 502

Query: 183  GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
            G CK G ++   GLL +M+   L      Y+ ++   C  G +++A  +  EM      P
Sbjct: 503  GFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFP 562

Query: 363  NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
            +V  FN +I G  K G +K   +++  M   G+ PD+ TY+ LI       K G +  A 
Sbjct: 563  DVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFL---KLGYLDEAI 619

Query: 543  KLLDLMLQKGVKP 581
               D M+  G +P
Sbjct: 620  SFFDKMVDSGFEP 632



 Score = 79.3 bits (194), Expect = 6e-13
 Identities = 57/200 (28%), Positives = 93/200 (46%)
 Frame = +3

Query: 48   NVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIKGLCKDGKMDAVMGLL 227
            +V+ YN LI GLCK   L +A+ +   +  +  A D VT   L+    K G ++  M L 
Sbjct: 423  DVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELW 482

Query: 228  DEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSPNVNMFNNLIHGLHKR 407
             ++ +  +  ++  Y  +I G C  G +  AK ++ +M      P+V  +N L+  L K 
Sbjct: 483  KQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKE 542

Query: 408  GKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAGKLLDLMLQKGVKPRN 587
            G L +   +   M      PDV ++  +I G     K G +  A  LL  M + G+ P  
Sbjct: 543  GSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSL---KAGDIKSAESLLVGMSRAGLSPDL 599

Query: 588  STYNILINGLCKNSAVPDAL 647
             TY+ LIN   K   + +A+
Sbjct: 600  FTYSKLINRFLKLGYLDEAI 619



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 3/219 (1%)
 Frame = +3

Query: 3    AREFFGEFSKNVGSFNVVGYNTLIKGLCKAKNLEEAVKLKVEMDSQNWAPDLVTYTTLIK 182
            A E + + S +    N   Y  +I G CK   L  A  L  +M      P +  Y  L+ 
Sbjct: 478  AMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLS 537

Query: 183  GLCKDGKMDAVMGLLDEMKNRGLDADAILYDEVIRGHCHNGDVEKAKEIVNEMLSKGCSP 362
             LCK+G +D    L +EM+      D + ++ +I G    GD++ A+ ++  M   G SP
Sbjct: 538  SLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP 597

Query: 363  NVNMFNNLIHGLHKRGKLKEVSAMVTFMMEQGIRPDVDTYTALIGGLCKDGKPGKVMRAG 542
            ++  ++ LI+   K G L E  +    M++ G  PD     +++      G+  K+    
Sbjct: 598  DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELV 657

Query: 543  KLL---DLMLQKGVKPRNSTYNILINGLCKNSAVPDALK 650
            K L   D++L K +      Y      +C +SA  D  K
Sbjct: 658  KKLVDKDIVLDKELTCTVMDY------MCNSSANMDLAK 690