BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00030388
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   196   2e-48
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   174   9e-42

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  196 bits (499), Expect = 2e-48
 Identities = 115/209 (55%), Positives = 136/209 (65%), Gaps = 12/209 (5%)
 Frame = -2

Query: 592 LPKRVRVCSKSTGRFFTVGRHDLHLLPSGKRAWVPLRHPTSAGGSSRRERPQRAVTKQPV 413
           LPKRVRV SK +GR FTVGRHDLH+LPSGKRAWVP+R P +AGG+ RRERP     K   
Sbjct: 14  LPKRVRVVSKRSGRIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGNFRRERPLVVSHKTQQ 73

Query: 412 VRPIRAP--VKVENRFSPLCVEESLVAP-----KSKITYADVVR--AKVSPAKAKKGVVT 260
           VRPIR P  VK  NRF+PL V+E + A        K +YAD +R  A V P+  +KGVVT
Sbjct: 74  VRPIRMPAAVKTSNRFAPLSVKEGVTAAVAAPINPKKSYADALRSSAFVKPS-VRKGVVT 132

Query: 259 LIETSRDFKLFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPVGLPEDHS 89
           L+ET +DF LF D     + V  PGQT  EA +L REF KR L FSGRRL   GLP    
Sbjct: 133 LVETEKDFALFGDEFTQNQVVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSGLPS--G 190

Query: 88  TDPFASPLPRGPVPARRVVHVEPFTWDNM 2
           +DPFASP P  P    +V HV+P +W+ M
Sbjct: 191 SDPFASPSPVRPALTPKVAHVDPVSWEGM 219


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  174 bits (442), Expect = 9e-42
 Identities = 113/210 (53%), Positives = 130/210 (61%), Gaps = 13/210 (6%)
 Frame = -2

Query: 592 LPKRVRVCSKSTGRFFTVGRHDLHLLPSGKRAWVPLRHPTSAGGSSRRERPQRAVTKQPV 413
           LPKRVRV SK   R FTVGRHDLH+LPSGKRAWVP+R P +AGGS RRERP     K   
Sbjct: 14  LPKRVRVISKRRARIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGSFRRERPPVVSHKTQQ 73

Query: 412 VRPIRAP--VKVENRFSPLCVEE---SLVAP--KSKITYADVVR--AKVSPAKAKKGVVT 260
           VRPIR P  VK  NRF+ L V+E     VAP    K +YAD +R  A V P+ A+KGVVT
Sbjct: 74  VRPIRTPTAVKTSNRFASLSVKEEAPEAVAPFNPKKKSYADALRSSAFVKPS-ARKGVVT 132

Query: 259 LIETSRDFKLFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPVGLPEDHS 89
           L+ET +DF LF D     + V  PGQT  EA SL REF KRA  FSG+RL   GLPE   
Sbjct: 133 LVETEKDFALFCDEFTQNQVVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVSGLPE--- 189

Query: 88  TDPFASPLPR-GPVPARRVVHVEPFTWDNM 2
             P  S L R       +  HV+P +W+ M
Sbjct: 190 -GPIPSLLLRQSACNCPKGCHVDPVSWEGM 218