BLASTX nr result
ID: Bupleurum21_contig00030269
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00030269
(335 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi... 150 8e-35
emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera] 150 8e-35
ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi... 134 8e-30
ref|XP_002311155.1| predicted protein [Populus trichocarpa] gi|2... 133 1e-29
ref|XP_003599019.1| Pentatricopeptide repeat-containing protein ... 127 1e-27
>ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 150 bits (380), Expect = 8e-35
Identities = 73/110 (66%), Positives = 90/110 (81%)
Frame = +3
Query: 3 FIGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVD 182
FIGAGL+DMY KMGDL AR+VFD +P++DVVAWN MIAG SQS +P E +D +SMQ+
Sbjct: 165 FIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLV 224
Query: 183 GLLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDFPVAVSNGLIDMY 332
G +EP+SVSLLNLFP +CKL ++ C+SIHGYV +RDF AVSNGLID+Y
Sbjct: 225 G-VEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLY 273
Score = 65.9 bits (159), Expect = 3e-09
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +3
Query: 9 GAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDGL 188
G L+ MY K G +A F+ + +D+V WN++I GY+Q +P +D +++
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA- 526
Query: 189 LEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
+ P + +++ + PA L D+ IHG ++K F V N LIDMY
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMY 576
Score = 65.5 bits (158), Expect = 4e-09
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDG 185
+ GLID+Y K GD+ AR+VFD + ++D V+W M+AGY+ + E L+ M++ G
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL-G 323
Query: 186 LLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKR--DFPVAVSNGLIDMY 332
+ VS ++ F A + +D+ K IHG L++ D + V+ L+ MY
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMY 374
Score = 64.3 bits (155), Expect = 1e-08
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDG 185
+ L+ MY K G+ A+Q+F L +D+VAW+ +IA Q+ P+E L + MQ +
Sbjct: 366 VATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQ-NQ 424
Query: 186 LLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDFPVAVSNG--LIDMY 332
++P V+L+++ PA L ++ KSIH + +K D +S G L+ MY
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMY 475
Score = 61.2 bits (147), Expect = 8e-08
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Frame = +3
Query: 18 LIDMYCKMGDLVSARQVFDVLP-EKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDGLLE 194
LIDMY K G L SA +F+ KD V WN +IA Y Q+ + +E + M+++
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FH 630
Query: 195 PTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
P SV+ +++ PA L R + H +++ F V N LIDMY
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMY 678
>emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 150 bits (380), Expect = 8e-35
Identities = 73/110 (66%), Positives = 90/110 (81%)
Frame = +3
Query: 3 FIGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVD 182
FIGAGL+DMY KMGDL AR+VFD +P++DVVAWN MIAG SQS +P E +D +SMQ+
Sbjct: 165 FIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLV 224
Query: 183 GLLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDFPVAVSNGLIDMY 332
G +EP+SVSLLNLFP +CKL ++ C+SIHGYV +RDF AVSNGLID+Y
Sbjct: 225 G-VEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLY 273
Score = 65.9 bits (159), Expect = 3e-09
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +3
Query: 9 GAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDGL 188
G L+ MY K G +A F+ + +D+V WN++I GY+Q +P +D +++
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA- 526
Query: 189 LEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
+ P + +++ + PA L D+ IHG ++K F V N LIDMY
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMY 576
Score = 65.5 bits (158), Expect = 4e-09
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDG 185
+ GLID+Y K GD+ AR+VFD + ++D V+W M+AGY+ + E L+ M++ G
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL-G 323
Query: 186 LLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKR--DFPVAVSNGLIDMY 332
+ VS ++ F A + +D+ K IHG L++ D + V+ L+ MY
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMY 374
Score = 64.3 bits (155), Expect = 1e-08
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDG 185
+ L+ MY K G+ A+Q+F L +D+VAW+ +IA Q+ P+E L + MQ +
Sbjct: 366 VATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQ-NQ 424
Query: 186 LLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDFPVAVSNG--LIDMY 332
++P V+L+++ PA L ++ KSIH + +K D +S G L+ MY
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMY 475
Score = 61.2 bits (147), Expect = 8e-08
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Frame = +3
Query: 18 LIDMYCKMGDLVSARQVFDVLP-EKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDGLLE 194
LIDMY K G L SA +F+ KD V WN +IA Y Q+ + +E + M+++
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FH 630
Query: 195 PTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
P SV+ +++ PA L R + H +++ F V N LIDMY
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMY 678
>ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 134 bits (337), Expect = 8e-30
Identities = 67/110 (60%), Positives = 83/110 (75%)
Frame = +3
Query: 3 FIGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVD 182
FIG GL+DMYCKMG L +AR+VFD +P KDV +WN MI+G SQS NP E L+ + MQ++
Sbjct: 163 FIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQME 222
Query: 183 GLLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDFPVAVSNGLIDMY 332
+EP SVS+LNL PAV +L DV +CKSIHGYV++R VSN LIDMY
Sbjct: 223 EGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVSNSLIDMY 272
Score = 62.8 bits (151), Expect = 3e-08
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPE-KDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVD 182
+ LIDMY K G L +A +F + KD V+WN MIAGY + E + M+++
Sbjct: 567 VKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLE 626
Query: 183 GLLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
+ P V+ + + PAV L +R + H +++ F + N LIDMY
Sbjct: 627 S-VRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMY 677
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDG 185
+ ++ MY K G+L A++ F L +D+V W+ ++ Q+ P E L + MQ +G
Sbjct: 365 VATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEG 424
Query: 186 LLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
L+P L +L A ++ R K +H YV+K D ++V+ L+ MY
Sbjct: 425 -LKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMY 474
Score = 55.8 bits (133), Expect = 3e-06
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDG 185
+ L+ MY + + A +F+ + KDVVAWN +I G+++ +P+ L+ +Q+ G
Sbjct: 466 VATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSG 525
Query: 186 LLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKR--DFPVAVSNGLIDMY 332
++P S ++++L A L D+ HG ++K + + V LIDMY
Sbjct: 526 -VQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMY 575
>ref|XP_002311155.1| predicted protein [Populus trichocarpa] gi|222850975|gb|EEE88522.1|
predicted protein [Populus trichocarpa]
Length = 305
Score = 133 bits (335), Expect = 1e-29
Identities = 67/110 (60%), Positives = 82/110 (74%)
Frame = +3
Query: 3 FIGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVD 182
FIG L+DMYCKMGDL AR+VFD +PEKDVVAW+ MI G SQS +P E ++SMQ+
Sbjct: 167 FIGTSLVDMYCKMGDLKLARKVFDKMPEKDVVAWSAMILGLSQSEDPNEVFGFIRSMQLS 226
Query: 183 GLLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDFPVAVSNGLIDMY 332
G +E VS+LNL PAV +L D+ AC+ IHGYV++R F VSNGLIDMY
Sbjct: 227 G-VELNLVSILNLVPAVSRLGDIDACRCIHGYVIRRGFDAIVSNGLIDMY 275
>ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 944
Score = 127 bits (318), Expect = 1e-27
Identities = 66/111 (59%), Positives = 78/111 (70%)
Frame = +3
Query: 3 FIGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVD 182
+IG LIDM+CKMG L +AR VFD +P KD V WN MI+G SQSLNP E L+ MQ++
Sbjct: 135 YIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQME 194
Query: 183 GLLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDFPVAVSNGLIDMYC 335
G E VS+LNL PAV +L DV CKSIHGYV++R VSN LIDMYC
Sbjct: 195 G-FEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVSNSLIDMYC 244
Score = 64.3 bits (155), Expect = 1e-08
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPEKDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVDG 185
+ LIDMYCK GD+ SA++VFD + +D V+W M+AGY ++ EGL L M+ G
Sbjct: 235 VSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMR-RG 293
Query: 186 LLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
++ V+++N V ++ D+ K I+ Y L+ + V+ ++ MY
Sbjct: 294 NVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMY 344
Score = 60.5 bits (145), Expect = 1e-07
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = +3
Query: 6 IGAGLIDMYCKMGDLVSARQVFDVLPE-KDVVAWNNMIAGYSQSLNPQEGLDCLKSMQVD 182
+ L+DMY K G L S ++F + KD V+WN MIAGY + E + + M+++
Sbjct: 538 VKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLE 597
Query: 183 GLLEPTSVSLLNLFPAVCKLVDVRACKSIHGYVLKRDF--PVAVSNGLIDMY 332
+ P V+ + + PAV L +R + H +++ F + N LIDMY
Sbjct: 598 N-VRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMY 648