BLASTX nr result
ID: Bupleurum21_contig00030164
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00030164
(622 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 109 3e-30
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 107 4e-30
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 107 4e-30
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 106 1e-29
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 103 5e-29
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 109 bits (273), Expect(3) = 3e-30
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = +3
Query: 144 HSNST-NVSCLMLACMVPEIQKQHELMNAYDMIENLKGMFEGQARQERFDVSKALYACKQ 320
H+N ++SCLMLA M PE+QKQ+E +A+ I+ L+GMFE QAR ERF+ SK+L+AC+
Sbjct: 69 HTNDALDISCLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACRL 128
Query: 321 GENDPVKPHILKMIGYIEQLDTLGFPSGRRL 413
E +PV PH++KMIGYIE L+ LGFP + L
Sbjct: 129 VEGNPVSPHVIKMIGYIESLEKLGFPLSQEL 159
Score = 36.6 bits (83), Expect(3) = 3e-30
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 478 YNMNEINKTLVELLGMLRTAEANIQKAAPAPILMVN 585
Y+MN +++TL EL GML+T E +IQK ++M N
Sbjct: 179 YHMNNMDRTLAELHGMLKTVEESIQKNGHHVMMMQN 214
Score = 31.6 bits (70), Expect(3) = 3e-30
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 386 LGLPFWPETQIDLILQSLNKNFSQFVMNY 472
LG P E D+ILQSL +F F++NY
Sbjct: 151 LGFPLSQELATDVILQSLPPSFEPFILNY 179
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 107 bits (268), Expect(3) = 4e-30
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +3
Query: 159 NVSCLMLACMVPEIQKQHELMNAYDMIENLKGMFEGQARQERFDVSKALYACKQGENDPV 338
++SCLMLA M PE+Q+Q+E ++A+ +I L+ MFE QAR ERF+ SK+L+AC+ E +PV
Sbjct: 166 DISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPV 225
Query: 339 KPHILKMIGYIEQLDTLGFPSGRRL 413
PH++KMIGY E LD LGFP R L
Sbjct: 226 SPHVIKMIGYTESLDKLGFPLSREL 250
Score = 37.7 bits (86), Expect(3) = 4e-30
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 478 YNMNEINKTLVELLGMLRTAEANIQK 555
+NMN +N+TL EL GML+TAE +I+K
Sbjct: 270 FNMNNLNRTLAELHGMLKTAEESIKK 295
Score = 32.0 bits (71), Expect(3) = 4e-30
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 386 LGLPFWPETQIDLILQSLNKNFSQFVMNY 472
LG P E DLILQSL +F F+MN+
Sbjct: 242 LGFPLSRELATDLILQSLPPSFEPFIMNF 270
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 107 bits (268), Expect(3) = 4e-30
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +3
Query: 159 NVSCLMLACMVPEIQKQHELMNAYDMIENLKGMFEGQARQERFDVSKALYACKQGENDPV 338
++SCLMLA M PE+Q+Q+E ++A+ +I L+ MFE QAR ERF+ SK+L+AC+ E +PV
Sbjct: 166 DISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPV 225
Query: 339 KPHILKMIGYIEQLDTLGFPSGRRL 413
PH++KMIGY E LD LGFP R L
Sbjct: 226 SPHVIKMIGYTESLDKLGFPLSREL 250
Score = 37.7 bits (86), Expect(3) = 4e-30
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 478 YNMNEINKTLVELLGMLRTAEANIQK 555
+NMN +N+TL EL GML+TAE +I+K
Sbjct: 270 FNMNNLNRTLAELHGMLKTAEESIKK 295
Score = 32.0 bits (71), Expect(3) = 4e-30
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 386 LGLPFWPETQIDLILQSLNKNFSQFVMNY 472
LG P E DLILQSL +F F+MN+
Sbjct: 242 LGFPLSRELATDLILQSLPPSFEPFIMNF 270
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 106 bits (264), Expect(3) = 1e-29
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +3
Query: 159 NVSCLMLACMVPEIQKQHELMNAYDMIENLKGMFEGQARQERFDVSKALYACKQGENDPV 338
++SCLMLA M PE+Q+Q+E ++A+ +I L+ MFE QAR ERF+ SK+L+AC+ E +PV
Sbjct: 153 DISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPV 212
Query: 339 KPHILKMIGYIEQLDTLGFPSGRRL 413
PH++K+IGY E LD LGFP R L
Sbjct: 213 SPHVIKIIGYTESLDKLGFPLSREL 237
Score = 37.7 bits (86), Expect(3) = 1e-29
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 478 YNMNEINKTLVELLGMLRTAEANIQK 555
+NMN +N+TL EL GML+TAE +I+K
Sbjct: 257 FNMNNLNRTLAELHGMLKTAEESIKK 282
Score = 32.0 bits (71), Expect(3) = 1e-29
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 386 LGLPFWPETQIDLILQSLNKNFSQFVMNY 472
LG P E DLILQSL +F F+MN+
Sbjct: 229 LGFPLSRELATDLILQSLPPSFEPFIMNF 257
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 103 bits (258), Expect(3) = 5e-29
Identities = 47/85 (55%), Positives = 64/85 (75%)
Frame = +3
Query: 159 NVSCLMLACMVPEIQKQHELMNAYDMIENLKGMFEGQARQERFDVSKALYACKQGENDPV 338
++SCLMLA M PE+Q+Q+E ++A+ +I L+ MFE QAR ERF+ SK+L+AC+ E + V
Sbjct: 141 DISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNLV 200
Query: 339 KPHILKMIGYIEQLDTLGFPSGRRL 413
PH++KMIGY E LD LGFP R L
Sbjct: 201 SPHVIKMIGYTESLDKLGFPLSREL 225
Score = 37.7 bits (86), Expect(3) = 5e-29
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 478 YNMNEINKTLVELLGMLRTAEANIQK 555
+NMN +N+TL EL GML+TAE +I+K
Sbjct: 245 FNMNNLNRTLAELHGMLKTAEESIKK 270
Score = 32.0 bits (71), Expect(3) = 5e-29
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 386 LGLPFWPETQIDLILQSLNKNFSQFVMNY 472
LG P E DLILQSL +F F+MN+
Sbjct: 217 LGFPLSRELATDLILQSLPPSFEPFIMNF 245