BLASTX nr result
ID: Bupleurum21_contig00030107
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00030107
(1485 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib... 271 2e-70
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici... 236 1e-59
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 203 8e-50
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 203 8e-50
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 192 1e-46
>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
At1g65750-like [Vitis vinifera]
Length = 820
Score = 271 bits (694), Expect = 2e-70
Identities = 164/461 (35%), Positives = 233/461 (50%), Gaps = 7/461 (1%)
Frame = -3
Query: 1483 KARYYDDTDFMEATLGPNPSFVWRSVLASKQMVVDGIRKRIGSGQCTHILGDPWLPDEVN 1304
+ARY+ ++ F+ A LG NPS++WRS+LA++ ++ G I SG + GD WLPD N
Sbjct: 354 QARYFRNSSFLNAELGSNPSYMWRSILAAQGLLKRGCYWSIASGTKVQVWGDSWLPDSSN 413
Query: 1303 PRIMTNNPVLVNEKVSSLMVPDQRRWDEDVIWDVCNVRDARLIVSIPLSSNRDEDQWYWG 1124
R++ PV + + + + W ED I D RDA LI+SIPL + EDQ W
Sbjct: 414 -RLIITPPVAGFDGIKVDELITEGLWREDFIRDKFMARDADLILSIPLPMSSREDQISWS 472
Query: 1123 KEKSGKYTVKSAYRNI----QEGKIHHQHLDNNSGFWRRIWNLKVPPKVKNLIWRASTGC 956
+ G+YT +S Y + Q + +D+N W ++W + PPK+ N WRA+ C
Sbjct: 473 FDARGEYTARSGYGALRCFRQSTALVASDVDSNF-VWAQLWKVTAPPKILNFAWRAARNC 531
Query: 955 LPTRTQLRLKHVEVSSLCPWCNVADETIQHTLVGCAFVKGIWTDTGLQMEDVQGGSFGEW 776
LPTR L ++HV+ CP C ET H LV C + +W ++GL M GSF +W
Sbjct: 532 LPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAARDVWDESGLAMLQGNFGSFVDW 591
Query: 775 LEISFSKYDTKKVCEICMLCWAIWEARNKLVWEQRNSTVIQIKMTAETYYDQWRVAQD-- 602
L F+ D + +CW +W RN +VW R Q+ T + W A +
Sbjct: 592 LATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLESWFHANETL 651
Query: 601 KSDVSMESFMPGDGLDKWVKPREEKLKINTDAAIFTDEGRYSYVFXXXXXXXXXXXXXXX 422
+ V++ S+ KW KP +KIN D A+F D+G VF
Sbjct: 652 ATAVTVPSYS-----SKWQKPDYGWIKINVDGAVFPDKGAIGAVF--RDHQGRFMGGFAK 704
Query: 421 XXXGSVQPEVAEALGIKEALRWAKEQPRERIRVESDSLLVIQAIRSNTKMPSYLGGIIED 242
P+V EALG++E L W E+ R RI VE+D L V+QAI+ + + G II D
Sbjct: 705 PFPHQTLPKVVEALGVREVLSWIHERSRSRIVVETDCLRVVQAIQHKSCPNTSFGFIIVD 764
Query: 241 CRRLLSELPLVIVFFVKRSANKVAHALARATC-FTSDRIFG 122
C +L L V V + +RSAN AH LA C FTS I+G
Sbjct: 765 CLDVLQHLVDVQVVYARRSANSAAHCLANGACSFTSLHIWG 805
>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538337|gb|EEF39944.1| nucleic acid binding protein,
putative [Ricinus communis]
Length = 483
Score = 236 bits (602), Expect = 1e-59
Identities = 149/449 (33%), Positives = 216/449 (48%), Gaps = 3/449 (0%)
Frame = -3
Query: 1483 KARYYDDTDFMEATLGPNPSFVWRSVLASKQMVVDGIRKRIGSGQCTHILGDPWLPDEVN 1304
KARYY + DF+ + LG NPS++W S+ + ++ G++ +IG G I WL D N
Sbjct: 33 KARYYPNGDFLSSLLGTNPSYIWASLQQVRDLICKGVQWKIGKGTEVSIGLHEWLLDASN 92
Query: 1303 PRIMTNNP-VLVNEKVSSLMVPDQRRWDEDVIWDVCNVRDARLIVSIPLSSNRDEDQWYW 1127
I TN P L + V SL+ P WD++++ D+ + RD LI SI LS DQ +W
Sbjct: 93 GFIETNLPDELRLQPVCSLLKPGTCDWDQEILNDLFSERDKNLINSIVLSPTVGTDQLFW 152
Query: 1126 GKEKSGKYTVKSAYRNIQEGKIHHQHLDNNSGFWRRIWNLKVPPKVKNLIWRASTGCLPT 947
K+ GK++VK YR +Q+ + +N WRR+W L + K K +WRA T LP
Sbjct: 153 FKDPKGKFSVKDVYR-VQQPDFSVLY-PSNVVVWRRLWKLNIAAKCKVFMWRALTNRLPV 210
Query: 946 RTQLRLKHVEVSSLCPWCNVADETIQHTLVGCAFVKGIWTDTGLQMEDVQGGSFGEWLEI 767
RT L ++ V S CP C ETI H LV C W L Q + E
Sbjct: 211 RTNLVMRKVTEDSSCPCCVSQPETIMHILVLCDVTTQSWKYVNLYQFLSQVSNLLEGARS 270
Query: 766 SFSKYDTKKVCEICMLCWAIWEARNKLVWEQRNSTVIQIKMTAETYYDQWRVAQDKSDVS 587
F +D V +L W++W N +VW + + + A ++ QW A+ +D
Sbjct: 271 VFEHFDDSIVASFVVLWWSLWTNMNDVVWNGKKLSWRAVASRASSFLFQWGKARKLTDYH 330
Query: 586 M--ESFMPGDGLDKWVKPREEKLKINTDAAIFTDEGRYSYVFXXXXXXXXXXXXXXXXXX 413
F GD L W KP K K+N DA+ + G+ F
Sbjct: 331 QLGRHFAGGDCL--WQKPATGKYKLNVDASSSAERGKSGASFVLRDNAGIWITGVLIIRP 388
Query: 412 GSVQPEVAEALGIKEALRWAKEQPRERIRVESDSLLVIQAIRSNTKMPSYLGGIIEDCRR 233
P+VAEA +KEAL W + E +++E+D L I+ + SYL +++DC+
Sbjct: 389 YIANPDVAEAWALKEALSWIHAKGMEEVQIETDCLRNIELLEEELHPNSYLLCLLKDCQD 448
Query: 232 LLSELPLVIVFFVKRSANKVAHALARATC 146
LL L + FV SAN VAH +++ATC
Sbjct: 449 LLRVLNRCNLVFVYGSANTVAHMISKATC 477
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 203 bits (517), Expect = 8e-50
Identities = 141/487 (28%), Positives = 226/487 (46%), Gaps = 18/487 (3%)
Frame = -3
Query: 1483 KARYYDDTDFMEATLGPNPSFVWRSVLASKQMVVDGIRKRIGSGQCTHILGDPWLPDEVN 1304
K RY+ ++ F EA +PSF WRS+L ++++ G+R +G G+ I D W+P
Sbjct: 901 KGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRP 960
Query: 1303 PRIMTNNPVLVNEKVSSLMVPDQRRWDEDVIWDVCNVRDARLIVSIPLSSNRDEDQWYWG 1124
+ T +P + VS LM D R WD D+I + V A+ I+ IP+S + D D W
Sbjct: 961 QLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWP 1020
Query: 1123 KEKSGKYTVKSAYRNIQEGKIHHQHLDNNSGF----------WRRIWNLKVPPKVKNLIW 974
+K G Y+V+SAY + ++ G W+ +W + P K+K +W
Sbjct: 1021 HDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLW 1080
Query: 973 RASTGCLPTRTQLRLKHVEVSSLCPWCNVADETIQHTLVGCAFVKGIWTD----TGLQME 806
RA+ CL T QLR +H+ + C +CN D+T++H + C F IW + +++
Sbjct: 1081 RAAHECLATGFQLRRRHIPSTDGCVFCN-RDDTVEHVFLFCPFAAQIWEEIKGKCAVKLG 1139
Query: 805 DVQGGSFGEWLEISFSKYDTKKVCEICMLCWAIWEARNKLVWEQRNSTV----IQIKMTA 638
+ +W+ + + + + W IWEARN + N TV + IK+ +
Sbjct: 1140 RNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNT--KNNNGTVHPQRVVIKILS 1197
Query: 637 ETYYDQWRVAQDKSDVSMESFMPGDGLDKWVKPREEKLKINTDAAIFTDEGRYSYVFXXX 458
Y + + V + + +W P IN+DAAIF+
Sbjct: 1198 ---YVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIR 1254
Query: 457 XXXXXXXXXXXXXXXGSVQPEVAEALGIKEALRWAKEQPRERIRVESDSLLVIQAIRSNT 278
V PE+AEAL I+ AL AKE+ E I + SD L VI+ I+++
Sbjct: 1255 DNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSG 1314
Query: 277 KMPSYLGGIIEDCRRLLSELPLVIVFFVKRSANKVAHALARATCFTSDRIFGGRSVPTEV 98
+ S +G +IED ++L S L V R +N AH+LAR ++ ++ RSV +
Sbjct: 1315 RDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNAELSTCTVY--RSVIPDY 1372
Query: 97 AAAVLAD 77
+L D
Sbjct: 1373 IRDILCD 1379
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 203 bits (517), Expect = 8e-50
Identities = 141/487 (28%), Positives = 226/487 (46%), Gaps = 18/487 (3%)
Frame = -3
Query: 1483 KARYYDDTDFMEATLGPNPSFVWRSVLASKQMVVDGIRKRIGSGQCTHILGDPWLPDEVN 1304
K RY+ ++ F EA +PSF WRS+L ++++ G+R +G G+ I D W+P
Sbjct: 858 KGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRP 917
Query: 1303 PRIMTNNPVLVNEKVSSLMVPDQRRWDEDVIWDVCNVRDARLIVSIPLSSNRDEDQWYWG 1124
+ T +P + VS LM D R WD D+I + V A+ I+ IP+S + D D W
Sbjct: 918 QLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWP 977
Query: 1123 KEKSGKYTVKSAYRNIQEGKIHHQHLDNNSGF----------WRRIWNLKVPPKVKNLIW 974
+K G Y+V+SAY + ++ G W+ +W + P K+K +W
Sbjct: 978 HDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLW 1037
Query: 973 RASTGCLPTRTQLRLKHVEVSSLCPWCNVADETIQHTLVGCAFVKGIWTD----TGLQME 806
RA+ CL T QLR +H+ + C +CN D+T++H + C F IW + +++
Sbjct: 1038 RAAHECLATGFQLRRRHIPSTDGCVFCN-RDDTVEHVFLFCPFAAQIWEEIKGKCAVKLG 1096
Query: 805 DVQGGSFGEWLEISFSKYDTKKVCEICMLCWAIWEARNKLVWEQRNSTV----IQIKMTA 638
+ +W+ + + + + W IWEARN + N TV + IK+ +
Sbjct: 1097 RNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNT--KNNNGTVHPQRVVIKILS 1154
Query: 637 ETYYDQWRVAQDKSDVSMESFMPGDGLDKWVKPREEKLKINTDAAIFTDEGRYSYVFXXX 458
Y + + V + + +W P IN+DAAIF+
Sbjct: 1155 ---YVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIR 1211
Query: 457 XXXXXXXXXXXXXXXGSVQPEVAEALGIKEALRWAKEQPRERIRVESDSLLVIQAIRSNT 278
V PE+AEAL I+ AL AKE+ E I + SD L VI+ I+++
Sbjct: 1212 DNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSG 1271
Query: 277 KMPSYLGGIIEDCRRLLSELPLVIVFFVKRSANKVAHALARATCFTSDRIFGGRSVPTEV 98
+ S +G +IED ++L S L V R +N AH+LAR ++ ++ RSV +
Sbjct: 1272 RDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNAELSTCTVY--RSVIPDY 1329
Query: 97 AAAVLAD 77
+L D
Sbjct: 1330 IRDILCD 1336
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 192 bits (489), Expect = 1e-46
Identities = 134/477 (28%), Positives = 224/477 (46%), Gaps = 8/477 (1%)
Frame = -3
Query: 1483 KARYYDDTDFMEATLGPNPSFVWRSVLASKQMVVDGIRKRIGSGQCTHILGDPWLPDEVN 1304
KA+Y+ + DF+ A LG + S+ W S+ +SK ++ +G+ R+G+G ++ DPW+ DE
Sbjct: 890 KAKYFPNCDFLNAPLGHSSSYSWSSIWSSKALLKEGVIWRVGNGSQINMWSDPWVLDE-G 948
Query: 1303 PRIMTNNPVLVNEKVSSLMVPDQRRWDEDVIWDVCNVRDARLIVSIPLSSNRDEDQWYWG 1124
R +T+ P VS L+ D+ W ++ N RD R I++ PLS+ D+ W
Sbjct: 949 GRFLTSTPHASIRWVSELIDFDRMEWKTSLLESFLNERDLRCILASPLSATPVPDELTWA 1008
Query: 1123 KEKSGKYTVKSAYRNIQEGKIHHQHLDNNSGFWRRIWNLKVPPKVKNLIWRASTGCLPTR 944
K Y+VK+AY + G +LDN W IW+L V PKV++ +WR T LP R
Sbjct: 1009 FTKDATYSVKTAYMIGKGG-----NLDNFHQAWVDIWSLDVSPKVRHFLWRLCTTSLPVR 1063
Query: 943 TQLRLKHVEVSSLCPWCNVADETIQHTLVGCAFVKGIWTDTGLQMEDVQGGSFGEW-LEI 767
+ L+ +H+ LCPW ET +H + C ++ +W D+G Q + S L +
Sbjct: 1064 SLLKHRHLTDDDLCPWGCGEIETQRHAIFDCPKMRDLWLDSGCQNLCSRDASMSMCDLLV 1123
Query: 766 SFSKYDTKKVCEICMLCWAIWEARNKLVWEQRN--STVIQIKMTAETYYDQWRVAQDKSD 593
S+ D K + L W IW RN ++ + S+V+ +++ R+ ++
Sbjct: 1124 SWRSLDGKLRIKGAYLAWCIWGERNAKIFNNKTTPSSVLMQRVS--------RLVEENGS 1175
Query: 592 VSMESFMP-----GDGLDKWVKPREEKLKINTDAAIFTDEGRYSYVFXXXXXXXXXXXXX 428
+ + P +W+ P + +K+N DA++ D G
Sbjct: 1176 HARRIYQPLVPRRTGSPRQWIAPPADSIKLNVDASLAVD-GWVGLSVIARRSDGGVLFAA 1234
Query: 427 XXXXXGSVQPEVAEALGIKEALRWAKEQPRERIRVESDSLLVIQAIRSNTKMPSYLGGII 248
PE+AEA ++ A++ + +R+ +ESD +VI + N S L ++
Sbjct: 1235 VRRVRAYWAPEIAEAKAVELAVKLGRRYGLQRVILESDCQVVINRLSKNAIFLSDLDLVL 1294
Query: 247 EDCRRLLSELPLVIVFFVKRSANKVAHALARATCFTSDRIFGGRSVPTEVAAAVLAD 77
+ + V+ VKR N VAH LA+ F ++++ P EVA VL D
Sbjct: 1295 FNILASCTYFSSVVWSHVKRDGNYVAHHLAKLIPFGVEQVWENH-FPPEVAPYVLMD 1350