BLASTX nr result
ID: Bupleurum21_contig00030072
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00030072
(1449 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] 587 e-165
ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ... 571 e-160
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2... 564 e-158
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi... 506 e-141
ref|NP_001154199.1| uncharacterized protein [Arabidopsis thalian... 491 e-136
>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 587 bits (1514), Expect = e-165
Identities = 286/410 (69%), Positives = 344/410 (83%), Gaps = 3/410 (0%)
Frame = +2
Query: 122 SQSRVQRLISSQSDPLLAKEIFELASLQPNFRHSLSTFHTLILKLARSHHFSHIDSLL-- 295
S SRVQ+LI+SQSDPLLAKEIF+LASLQPNF+HS S+FH LILKL + FS + LL
Sbjct: 13 SPSRVQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSLMQDLLMR 72
Query: 296 -KSQHYPLSPSLFTRIIRIYGDANHPQKALHMFYTILQSNIKPLPKHLNAILTVLVARRN 472
KS+ Y ++PSLF+ II IYG+AN P +AL F+++LQ + KPLPKHLN +L +LV+ RN
Sbjct: 73 LKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNXLLQLLVSHRN 132
Query: 473 FLRPAFSLFRSAHRYGVSPNVESYNILMSAFCLNGDLSIAYKLFNEMFKRDLVPDVQSYR 652
++RPAF LF+SAHRYGVSP+ +SYNILMSAFC NGDLSIAY LFN+MFKRD+ PDV+SYR
Sbjct: 133 YIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYR 192
Query: 653 ILMQGLCRRSQVSRAVDLLDDMLNKGFVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVK 832
ILMQGLCR+SQV+RAVDLL+DMLNKG+VPDALSYTTLLNSLCRKKKL+EAYKLLCRMKVK
Sbjct: 193 ILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVK 252
Query: 833 GCNPDIIHYNTIIVGFCREKRALDACKVLEDMTANGCLPNLVSYRTIVGGLCDQGMYDEA 1012
GCNPDI+HYNT+I+GFCRE R LDACKVLEDM +NGC PNL+SY T+V GLCDQG+YDEA
Sbjct: 253 GCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEA 312
Query: 1013 YKYIMEMISKGLYPHFSLFHVLVRELCNVGKTEEACGLLLEMLRIGEAPHVETWVEIVTR 1192
Y+ EM+SKG PHFS+FH L+ CNVGK EEAC +L EMLR GEA H ETWV I+ R
Sbjct: 313 KNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAIIPR 372
Query: 1193 ICDSDDEISRVEDTLKEVLKVEIKPHTKLVEAGSGLQEYMIRKLKATRRK 1342
IC+ D++ R+E+ E LK+EI P+T+LVEAG GL+EY+IRK++ RK
Sbjct: 373 ICEV-DKLVRMENIFDEXLKLEITPNTRLVEAGIGLEEYVIRKVRDKSRK 421
>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical
[Medicago truncatula] gi|355501623|gb|AES82826.1|
Pentatricopeptide repeat-containing protein [Medicago
truncatula]
Length = 451
Score = 571 bits (1471), Expect = e-160
Identities = 278/424 (65%), Positives = 346/424 (81%), Gaps = 4/424 (0%)
Frame = +2
Query: 83 FRSFSSPSSAVNLSQSRVQRLISSQSDPLLAKEIFELASLQPNFRHSLSTFHTLILKLAR 262
F S SS SS + S +RVQ+LI+SQSDPLLAKEIF+ ASLQPNFRH+ ST+ LILK R
Sbjct: 29 FHSSSSSSSPIG-SPTRVQKLIASQSDPLLAKEIFDYASLQPNFRHNYSTYLILILKFGR 87
Query: 263 SHHFSHIDSLLK----SQHYPLSPSLFTRIIRIYGDANHPQKALHMFYTILQSNIKPLPK 430
S HFS +D LL+ P++P+LF+ +I+IYG+AN P KAL+ FY +LQ NIKPL K
Sbjct: 88 SKHFSLLDDLLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTK 147
Query: 431 HLNAILTVLVARRNFLRPAFSLFRSAHRYGVSPNVESYNILMSAFCLNGDLSIAYKLFNE 610
HLN IL +LV+ RN+LRPAF LF+ AH++GV P+ +SYNILM AFCLNGD+SIAY LFN+
Sbjct: 148 HLNRILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNK 207
Query: 611 MFKRDLVPDVQSYRILMQGLCRRSQVSRAVDLLDDMLNKGFVPDALSYTTLLNSLCRKKK 790
MFKRD+VPD+QSYRILMQ LCR+SQV+ AVDL +DMLNKGFVPD+ +YTTLLNSLCRKKK
Sbjct: 208 MFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKK 267
Query: 791 LREAYKLLCRMKVKGCNPDIIHYNTIIVGFCREKRALDACKVLEDMTANGCLPNLVSYRT 970
LREAYKLLCRMKVKGCNPDI+HYNT+I+GFCRE RA DACKV++DM ANGCLPNLVSYRT
Sbjct: 268 LREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRT 327
Query: 971 IVGGLCDQGMYDEAYKYIMEMISKGLYPHFSLFHVLVRELCNVGKTEEACGLLLEMLRIG 1150
+V GLC GM DEA KY+ EM+SKG PHF++ H LV+ CNVG+ EEACG+L + L
Sbjct: 328 LVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGVLTKSLEHR 387
Query: 1151 EAPHVETWVEIVTRICDSDDEISRVEDTLKEVLKVEIKPHTKLVEAGSGLQEYMIRKLKA 1330
EAPH +TW+ IV +IC+ DD + +++ L+EVLK+EIK T++V+AG GL++Y+IRK++A
Sbjct: 388 EAPHKDTWMIIVPQICEVDDGV-KIDGVLEEVLKIEIKGDTRIVDAGIGLEDYLIRKIRA 446
Query: 1331 TRRK 1342
R+
Sbjct: 447 KSRQ 450
>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
predicted protein [Populus trichocarpa]
Length = 475
Score = 564 bits (1453), Expect = e-158
Identities = 270/403 (66%), Positives = 340/403 (84%), Gaps = 3/403 (0%)
Frame = +2
Query: 122 SQSRVQRLISSQSDPLLAKEIFELASLQPNFRHSLSTFHTLILKLARSHHFSHIDSLL-- 295
S SRVQ+LI+SQSDPLLAKEIF+ AS QPNF+HS S++ LILKL R+ +FS ID LL
Sbjct: 66 SPSRVQKLIASQSDPLLAKEIFDYASRQPNFQHSYSSYLILILKLGRAKYFSFIDDLLTD 125
Query: 296 -KSQHYPLSPSLFTRIIRIYGDANHPQKALHMFYTILQSNIKPLPKHLNAILTVLVARRN 472
KS++YP++P+LF+ II IYG+AN P KAL +FYTIL+ + P PKHLN IL +LV+ +N
Sbjct: 126 LKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPSPKHLNGILEILVSHQN 185
Query: 473 FLRPAFSLFRSAHRYGVSPNVESYNILMSAFCLNGDLSIAYKLFNEMFKRDLVPDVQSYR 652
+++PAF LF+ AH Y V PN +SYNIL+ AFCLNG +S+AY LFN+MFKRD++PDV+SYR
Sbjct: 186 YIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYR 245
Query: 653 ILMQGLCRRSQVSRAVDLLDDMLNKGFVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVK 832
ILMQ LCR+SQV+ AVDLL+DMLNKG+VPDALSYTTLLNSLCRKKKLREAYKLLCRMKVK
Sbjct: 246 ILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVK 305
Query: 833 GCNPDIIHYNTIIVGFCREKRALDACKVLEDMTANGCLPNLVSYRTIVGGLCDQGMYDEA 1012
GCNPDIIHYNT+I+GFCRE RA+DACKVLEDM +NGC+PNLVSYRT+VGGLCDQGM+DEA
Sbjct: 306 GCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEA 365
Query: 1013 YKYIMEMISKGLYPHFSLFHVLVRELCNVGKTEEACGLLLEMLRIGEAPHVETWVEIVTR 1192
++ EM+ KG PHF++ + L++ CNVGK EEACG++ E+L+ GEAPH ETWV +V+R
Sbjct: 366 KSHLEEMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSR 425
Query: 1193 ICDSDDEISRVEDTLKEVLKVEIKPHTKLVEAGSGLQEYMIRK 1321
IC+ DD + R+ + L +V KVE+K T++VEAG GL+EY+I++
Sbjct: 426 ICEVDD-LQRIGEILDKVKKVELKGDTRIVEAGIGLEEYLIKR 467
>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 506 bits (1304), Expect = e-141
Identities = 244/407 (59%), Positives = 323/407 (79%), Gaps = 3/407 (0%)
Frame = +2
Query: 122 SQSRVQRLISSQSDPLLAKEIFELASLQPNFRHSLSTFHTLILKLARSHHFSHIDSLL-- 295
S RVQ+LI+SQSDPLLAKEIF+ A QP+FR S S+ LILKL RS +FS ID LL
Sbjct: 72 SPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLS 131
Query: 296 -KSQHYPLSPSLFTRIIRIYGDANHPQKALHMFYTILQSNIKPLPKHLNAILTVLVARRN 472
KS+ YP++P+ F+ II+IYG+A+ P KAL +FYT++ P K LN IL +LV+ RN
Sbjct: 132 FKSRRYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQLNRILEILVSHRN 191
Query: 473 FLRPAFSLFRSAHRYGVSPNVESYNILMSAFCLNGDLSIAYKLFNEMFKRDLVPDVQSYR 652
F+RPAF LF++A +GV PN +SYNIL+ AFC NG++SIAY LFN+MF+R+++PDV++YR
Sbjct: 192 FIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYR 251
Query: 653 ILMQGLCRRSQVSRAVDLLDDMLNKGFVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVK 832
LMQGLCR++QV+ AVDLL+DMLNKG++PD LSY TLLNSLCRKKKLREAYKLLCRMKVK
Sbjct: 252 TLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVK 311
Query: 833 GCNPDIIHYNTIIVGFCREKRALDACKVLEDMTANGCLPNLVSYRTIVGGLCDQGMYDEA 1012
GCNPDI HYNT+I+GFCRE RALDACK+LEDM +NGCLPNLVSY ++ GLCDQGM++ A
Sbjct: 312 GCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELA 371
Query: 1013 YKYIMEMISKGLYPHFSLFHVLVRELCNVGKTEEACGLLLEMLRIGEAPHVETWVEIVTR 1192
Y+ EM KG YPHFS+ H LV+ ++G+ E+C +L +ML+ G+APH +TW I++
Sbjct: 372 KGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAPHSDTWEIIISG 431
Query: 1193 ICDSDDEISRVEDTLKEVLKVEIKPHTKLVEAGSGLQEYMIRKLKAT 1333
IC+ +D ++ + +++LK +++ T++VEAG+GL EY+IRKL+A+
Sbjct: 432 ICEVED-TAKFCEVWEKILKKDVRRDTRIVEAGTGLGEYLIRKLQAS 477
>ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein
[Arabidopsis thaliana]
Length = 466
Score = 491 bits (1264), Expect = e-136
Identities = 241/418 (57%), Positives = 317/418 (75%), Gaps = 3/418 (0%)
Frame = +2
Query: 95 SSPSSAVNLSQSRVQRLISSQSDPLLAKEIFELASLQPNFRHSLSTFHTLILKLARSHHF 274
S+P S + S +RVQ+LI+SQSDPLLAKEIF+ AS QPNFRHS S+ LILKL R +F
Sbjct: 42 SNPKSPIG-SPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYF 100
Query: 275 SHIDSLL---KSQHYPLSPSLFTRIIRIYGDANHPQKALHMFYTILQSNIKPLPKHLNAI 445
+ ID +L +S YPL+ +FT +I++Y +A P+K L FY +L+ N P PKHLN I
Sbjct: 101 NLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRI 160
Query: 446 LTVLVARRNFLRPAFSLFRSAHRYGVSPNVESYNILMSAFCLNGDLSIAYKLFNEMFKRD 625
L VLV+ R +L+ AF LF+S+ +GV PN SYN+LM AFCLN DLSIAY+LF +M +RD
Sbjct: 161 LDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERD 220
Query: 626 LVPDVQSYRILMQGLCRRSQVSRAVDLLDDMLNKGFVPDALSYTTLLNSLCRKKKLREAY 805
+VPDV SY+IL+QG CR+ QV+ A++LLDDMLNKGFVPD LSYTTLLNSLCRK +LREAY
Sbjct: 221 VVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAY 280
Query: 806 KLLCRMKVKGCNPDIIHYNTIIVGFCREKRALDACKVLEDMTANGCLPNLVSYRTIVGGL 985
KLLCRMK+KGCNPD++HYNT+I+GFCRE RA+DA KVL+DM +NGC PN VSYRT++GGL
Sbjct: 281 KLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGL 340
Query: 986 CDQGMYDEAYKYIMEMISKGLYPHFSLFHVLVRELCNVGKTEEACGLLLEMLRIGEAPHV 1165
CDQGM+DE KY+ EMISKG PHFS+ + LV+ C+ GK EEAC ++ +++ GE H
Sbjct: 341 CDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHS 400
Query: 1166 ETWVEIVTRICDSDDEISRVEDTLKEVLKVEIKPHTKLVEAGSGLQEYMIRKLKATRR 1339
+TW ++ IC ++DE +++ L++ +K EI T++V+ G GL Y+ KL+ R+
Sbjct: 401 DTWEMVIPLIC-NEDESEKIKLFLEDAVKEEITGDTRIVDVGIGLGSYLSSKLQMKRK 457