BLASTX nr result
ID: Bupleurum21_contig00029940
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00029940
(650 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containi... 353 1e-95
emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera] 353 1e-95
ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 333 2e-89
ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containi... 333 2e-89
ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containi... 330 1e-88
>ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 353 bits (907), Expect = 1e-95
Identities = 172/216 (79%), Positives = 192/216 (88%)
Frame = -1
Query: 650 IDLYSKCCGDMSDSKKVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRP 471
IDLYSKC G MSD +KVF+EI PDLVLWNTM+SGYSQNE++ EDA+ CFRQMQ IG+RP
Sbjct: 282 IDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRP 341
Query: 470 DDGSFVCVISACSDLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRL 291
+D SFVCVISACS+LSSP QGKQ+HSL LKSDIP NRISV+NALIAMYSKCGNLQDARRL
Sbjct: 342 NDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRL 401
Query: 290 FDRMPEHNTVSLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKV 111
FDRM EHNTVSLNSMIAGYAQHGI E+LHLF+ ML+ I+PT ITFISVLSACAHTG+V
Sbjct: 402 FDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRV 461
Query: 110 EEGQKHFKMMTDKFHIMPDAEHYSCMIDLLGRAGKL 3
EEG +F MM +KF+I P+AEHYSCMIDLLGRAGKL
Sbjct: 462 EEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKL 497
Score = 96.3 bits (238), Expect = 4e-18
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 2/201 (0%)
Frame = -1
Query: 605 KVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRPDDGSFVCVISACSDL 426
++F +I PDLV +NT+IS Y+ + + A+ F M+ +G D + VI+AC D
Sbjct: 95 QLFDQIPEPDLVSYNTLISAYADCGE-TAPALGLFSGMREMGLDMDGFTLSAVITACCD- 152
Query: 425 SSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPE-HNTVSLNS 249
L G Q+HS+ + S + +SVNNAL+ Y K G+L DA+R+F M + VS NS
Sbjct: 153 DVGLIG-QLHSVAVSSGFD-SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210
Query: 248 MIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKVEEG-QKHFKMMTDK 72
MI Y QH G +AL LF+ M++ ++ T SVL+A + G Q H +++
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270
Query: 71 FHIMPDAEHYSCMIDLLGRAG 9
FH ++ S +IDL + G
Sbjct: 271 FH--QNSHVGSGLIDLYSKCG 289
Score = 58.2 bits (139), Expect = 1e-06
Identities = 39/104 (37%), Positives = 57/104 (54%)
Frame = -1
Query: 431 DLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPEHNTVSLN 252
DLS+ GK +HSL +KS IP + +N I +YSKCG L AR+ F + + N S N
Sbjct: 23 DLST---GKSLHSLYIKSFIPPSTY-FSNHFILLYSKCGRLAWARKAFQDISDPNVFSFN 78
Query: 251 SMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHT 120
++IA YA+ A LF+++ + D+ T IS + C T
Sbjct: 79 AIIAAYAKESRPLIAHQLFDQIPEPDLVSYN-TLISAYADCGET 121
>emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 353 bits (907), Expect = 1e-95
Identities = 172/216 (79%), Positives = 192/216 (88%)
Frame = -1
Query: 650 IDLYSKCCGDMSDSKKVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRP 471
IDLYSKC G MSD +KVF+EI PDLVLWNTM+SGYSQNE++ EDA+ CFRQMQ IG+RP
Sbjct: 282 IDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRP 341
Query: 470 DDGSFVCVISACSDLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRL 291
+D SFVCVISACS+LSSP QGKQ+HSL LKSDIP NRISV+NALIAMYSKCGNLQDARRL
Sbjct: 342 NDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRL 401
Query: 290 FDRMPEHNTVSLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKV 111
FDRM EHNTVSLNSMIAGYAQHGI E+LHLF+ ML+ I+PT ITFISVLSACAHTG+V
Sbjct: 402 FDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRV 461
Query: 110 EEGQKHFKMMTDKFHIMPDAEHYSCMIDLLGRAGKL 3
EEG +F MM +KF+I P+AEHYSCMIDLLGRAGKL
Sbjct: 462 EEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKL 497
Score = 96.3 bits (238), Expect = 4e-18
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 2/201 (0%)
Frame = -1
Query: 605 KVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRPDDGSFVCVISACSDL 426
++F +I PDLV +NT+IS Y+ + + A+ F M+ +G D + VI+AC D
Sbjct: 95 QLFDQIPEPDLVSYNTLISAYADCGE-TAPALGLFSGMREMGLDMDXFTLSAVITACCD- 152
Query: 425 SSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPE-HNTVSLNS 249
L G Q+HS+ + S + +SVNNAL+ Y K G+L DA+R+F M + VS NS
Sbjct: 153 DVGLIG-QLHSVAVSSGFD-SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210
Query: 248 MIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKVEEG-QKHFKMMTDK 72
MI Y QH G +AL LF+ M++ ++ T SVL+A + G Q H +++
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270
Query: 71 FHIMPDAEHYSCMIDLLGRAG 9
FH ++ S +IDL + G
Sbjct: 271 FH--QNSHVGSGLIDLYSKCG 289
Score = 58.2 bits (139), Expect = 1e-06
Identities = 39/104 (37%), Positives = 57/104 (54%)
Frame = -1
Query: 431 DLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPEHNTVSLN 252
DLS+ GK +HSL +KS IP + +N I +YSKCG L AR+ F + + N S N
Sbjct: 23 DLST---GKSLHSLYIKSFIPPSTY-FSNHFILLYSKCGRLAWARKAFQDISDPNVFSFN 78
Query: 251 SMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHT 120
++IA YA+ A LF+++ + D+ T IS + C T
Sbjct: 79 AIIAAYAKESRPLIAHQLFDQIPEPDLVSYN-TLISAYADCGET 121
>ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49710-like [Cucumis sativus]
Length = 720
Score = 333 bits (853), Expect = 2e-89
Identities = 160/216 (74%), Positives = 185/216 (85%)
Frame = -1
Query: 650 IDLYSKCCGDMSDSKKVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRP 471
IDLYSKC G M D +KVF EI+NPDLVLWNTMISGYS ED S++A+ CFRQ+Q +GHRP
Sbjct: 282 IDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRP 341
Query: 470 DDGSFVCVISACSDLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRL 291
DD S VCVISACS++SSP QG+QVH L LK DIP NRISVNNALIAMYSKCGNL+DA+ L
Sbjct: 342 DDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTL 401
Query: 290 FDRMPEHNTVSLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKV 111
FD MPEHNTVS NSMIAGYAQHG+G ++LHLF+RML+ D +PT ITFISVL+ACAHTG+V
Sbjct: 402 FDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRV 461
Query: 110 EEGQKHFKMMTDKFHIMPDAEHYSCMIDLLGRAGKL 3
E+G+ +F MM KF I P+A H+SCMIDLLGRAGKL
Sbjct: 462 EDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKL 497
Score = 83.6 bits (205), Expect = 3e-14
Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 2/201 (0%)
Frame = -1
Query: 605 KVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRPDDGSFVCVISACSDL 426
++F E+ PD V +NT+I+ Y++ D ++ A F +M+ D + +I+AC
Sbjct: 95 QLFDEMPQPDSVSYNTLIAAYARRGD-TQPAFQLFLEMREAFLDMDGFTLSGIITACGIN 153
Query: 425 SSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPE-HNTVSLNS 249
+ +Q+H+L + + + + +SV NALI YSK G L++ARR+F + E + VS NS
Sbjct: 154 VGLI--RQLHALSVVTGLD-SYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNS 210
Query: 248 MIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKVEEG-QKHFKMMTDK 72
M+ Y QH G +AL L+ M + T SVL+A + + G Q H K++
Sbjct: 211 MVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG 270
Query: 71 FHIMPDAEHYSCMIDLLGRAG 9
+H ++ S +IDL + G
Sbjct: 271 YH--QNSHVGSGLIDLYSKCG 289
Score = 62.4 bits (150), Expect = 7e-08
Identities = 36/114 (31%), Positives = 63/114 (55%)
Frame = -1
Query: 410 GKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPEHNTVSLNSMIAGYA 231
GK +H+L +KS +P + N+ L+ +YSKC L ARR+FD + N S N++I+ YA
Sbjct: 27 GKSLHALYIKSFVPTSTYLSNHFLL-LYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYA 85
Query: 230 QHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKVEEGQKHFKMMTDKF 69
+ + A LF+ M + P +++ ++++A A G + + F M + F
Sbjct: 86 KESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRGDTQPAFQLFLEMREAF 135
>ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 333 bits (853), Expect = 2e-89
Identities = 160/216 (74%), Positives = 183/216 (84%)
Frame = -1
Query: 650 IDLYSKCCGDMSDSKKVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRP 471
IDLYSKC G M + +KVF+EI PDLVLWNTMISG+S ED SED + CFR+MQR G RP
Sbjct: 285 IDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRP 344
Query: 470 DDGSFVCVISACSDLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRL 291
DD SFVCV SACS+LSSP GKQVH+L +KSD+P NR+SVNNAL+AMYSKCGN+ DARR+
Sbjct: 345 DDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRV 404
Query: 290 FDRMPEHNTVSLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKV 111
FD MPEHNTVSLNSMIAGYAQHG+ E+L LFE ML+ DI+P ITFI+VLSAC HTGKV
Sbjct: 405 FDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKV 464
Query: 110 EEGQKHFKMMTDKFHIMPDAEHYSCMIDLLGRAGKL 3
EEGQK+F MM ++F I P+AEHYSCMIDLLGRAGKL
Sbjct: 465 EEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKL 500
Score = 81.6 bits (200), Expect = 1e-13
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 4/186 (2%)
Frame = -1
Query: 611 SKKVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRPDDGSFVCVISACS 432
+++VF EI PD+V +NT+I+ Y+ + + F +++ + D + VI+AC
Sbjct: 94 ARRVFDEIPQPDIVSYNTLIAAYADRGECGP-TLRLFEEVRELRLGLDGFTLSGVITACG 152
Query: 431 DLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPE---HNTV 261
D + +Q+H V+ SVNNA++A YS+ G L +ARR+F M E + V
Sbjct: 153 DDVGLV--RQLHCFVVVCGHDCYA-SVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEV 209
Query: 260 SLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKVEEG-QKHFKM 84
S N+MI QH G EA+ LF M++ + T SVL+A + G Q H M
Sbjct: 210 SWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMM 269
Query: 83 MTDKFH 66
+ FH
Sbjct: 270 IKSGFH 275
>ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 330 bits (847), Expect = 1e-88
Identities = 160/216 (74%), Positives = 181/216 (83%)
Frame = -1
Query: 650 IDLYSKCCGDMSDSKKVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRP 471
IDLYSKC G M + +KVF+EI PDLVLWNTMISG+SQ ED SED I CFR+MQ G P
Sbjct: 285 IDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHP 344
Query: 470 DDGSFVCVISACSDLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRL 291
DD SFVCV SACS+LSSP GKQVH+L +KSDIP NR+SVNNAL+AMYSKCGN+ DARR+
Sbjct: 345 DDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRV 404
Query: 290 FDRMPEHNTVSLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKV 111
FD MPEHN VSLNSMIAGYAQHG+ E+L LFE ML+ DI+P ITFI+VLSAC HTGKV
Sbjct: 405 FDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKV 464
Query: 110 EEGQKHFKMMTDKFHIMPDAEHYSCMIDLLGRAGKL 3
EEGQK+F MM ++F I P+AEHYSCMIDLLGRAGKL
Sbjct: 465 EEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKL 500
Score = 83.2 bits (204), Expect = 4e-14
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 4/186 (2%)
Frame = -1
Query: 611 SKKVFQEINNPDLVLWNTMISGYSQNEDYSEDAIACFRQMQRIGHRPDDGSFVCVISACS 432
+++VF EI PD+V +NT+I+ Y+ + A+ F +++ + D + VI AC
Sbjct: 94 ARQVFDEIPQPDIVSYNTLIAAYADRGE-CRPALRLFAEVRELRFGLDGFTLSGVIIACG 152
Query: 431 DLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDRMPE---HNTV 261
D + +Q+H V+ SVNNA++A YS+ G L +ARR+F M E + V
Sbjct: 153 DDVGLV--RQLHCFVVVCGYDCYA-SVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEV 209
Query: 260 SLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKVEEG-QKHFKM 84
S N+MI QH G EA+ LF M++ + T SVL+A + G Q H M
Sbjct: 210 SWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMM 269
Query: 83 MTDKFH 66
+ FH
Sbjct: 270 IKSGFH 275
Score = 58.2 bits (139), Expect = 1e-06
Identities = 36/124 (29%), Positives = 66/124 (53%)
Frame = -1
Query: 461 SFVCVISACSDLSSPLQGKQVHSLVLKSDIPINRISVNNALIAMYSKCGNLQDARRLFDR 282
+F ++ AC + GK +H+L KS IP + ++N +YSKCG+L +A+ FD
Sbjct: 11 TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTY-LSNHFTLLYSKCGSLHNAQTSFDL 69
Query: 281 MPEHNTVSLNSMIAGYAQHGIGQEALHLFERMLKTDISPTRITFISVLSACAHTGKVEEG 102
N S N++I YA+H + A +F+ + + DI +++ ++++A A G+
Sbjct: 70 TQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDI----VSYNTLIAAYADRGECRPA 125
Query: 101 QKHF 90
+ F
Sbjct: 126 LRLF 129